Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17i16
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.52 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.8  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   6.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   8.5  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 655 KRDCAAVQYLGKFFDFNSGKHGSFDTRKSVVLQSGHH 545
           K +   V+Y  K+FD+N G     D ++   +QSG +
Sbjct: 28  KANIFQVKYQWKYFDYNFGS----DEKRQAAIQSGEY 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -3

Query: 586 FDTRKSVVLQS---GHHFAWLLKYKTI 515
           F   KSV  Q+    +H+ WL K KTI
Sbjct: 125 FKNAKSVTFQTMTIPNHYLWLYKDKTI 151


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 42

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +1

Query: 13 IQKDYGAAHERFAMHH 60
          ++KD+G   +++ +HH
Sbjct: 10 LKKDFGTYFQQYCLHH 25


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 182 DIDSIFDSICLCGQNRPTAFRCEPQHTKTMRACCL*IYNC 63
           DI++IF    +   N+   ++ + ++ K  R+  L  YNC
Sbjct: 657 DIENIFKYGYVSHANQRNMYKLDLKNMKYTRSADLSSYNC 696


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 372 EITKSPTSAFKRSILAPPAVSFS 440
           EIT    S  K  I+APP   +S
Sbjct: 91  EITALAPSTMKIKIIAPPEKKYS 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,337
Number of Sequences: 438
Number of extensions: 4350
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)