Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17i12
(161 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 1.0
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 1.0
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 1.0
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 1.0
Z82261-5|CAH60756.1| 304|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr... 26 3.1
AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical... 26 3.1
Z83108-2|CAB05510.1| 820|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z72502-8|CAD44097.1| 374|Caenorhabditis elegans Hypothetical pr... 25 5.5
AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical ... 25 5.5
AF101316-4|AAC69229.2| 296|Caenorhabditis elegans Serpentine re... 25 7.2
AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical ... 25 7.2
AC006777-6|AAK72307.1| 517|Caenorhabditis elegans Hypothetical ... 25 7.2
AF038608-2|AAU05595.1| 297|Caenorhabditis elegans Serpentine re... 25 9.6
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -2
Query: 136 YILFIRNKYILITIIHVFILQYFLYNLFNYIXSTIHVDYTF 14
++ + + ++ ++ VFI +YN N + IH D F
Sbjct: 12 FVAYSAVTFSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -2
Query: 136 YILFIRNKYILITIIHVFILQYFLYNLFNYIXSTIHVDYTF 14
++ + + ++ ++ VFI +YN N + IH D F
Sbjct: 12 FVAYSAVTFSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -2
Query: 136 YILFIRNKYILITIIHVFILQYFLYNLFNYIXSTIHVDYTF 14
++ + + ++ ++ VFI +YN N + IH D F
Sbjct: 12 FVAYSAVTFSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 27.9 bits (59), Expect = 1.0
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -2
Query: 136 YILFIRNKYILITIIHVFILQYFLYNLFNYIXSTIHVDYTF 14
++ + + ++ ++ VFI +YN N + IH D F
Sbjct: 12 FVAYSAVTFSVVAVVSVFITLPMVYNYVNNVKKQIHTDVNF 52
>Z82261-5|CAH60756.1| 304|Caenorhabditis elegans Hypothetical
protein C35D6.9a protein.
Length = 304
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = -2
Query: 148 IKLFYILFIRNKYILITIIHVFILQYFLYNLFNYIXSTIHVDYTFS 11
I +F +F+ K ++I+ +F +N+F+ + + +HV FS
Sbjct: 152 IFIFVFIFVDAKEESNGFKTIYIVIFFTFNIFSILSAILHVPMYFS 197
>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical protein
F39B1.1 protein.
Length = 1607
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 97 IIHVFILQYFLYNLFNYIXSTIHVDYTFSYF 5
IIHV Q FL LFN + H D +++F
Sbjct: 1424 IIHV---QKFLIYLFNQVDEICHCDLVYTFF 1451
>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical protein
F39B1.1 protein.
Length = 1607
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 97 IIHVFILQYFLYNLFNYIXSTIHVDYTFSYF 5
IIHV Q FL LFN + H D +++F
Sbjct: 1424 IIHV---QKFLIYLFNQVDEICHCDLVYTFF 1451
>AL033514-32|CAA22112.1| 344|Caenorhabditis elegans Hypothetical
protein Y75B8A.34 protein.
Length = 344
Score = 26.2 bits (55), Expect = 3.1
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -2
Query: 112 YILITIIHVFILQYFLYNLFNYIXSTIHVDYTFSYFS 2
YI+ ++ FI+ + F +I ++++DY+ ++FS
Sbjct: 98 YIISSLASAFIIDSRTLSGFYFIQPSLYLDYSSNFFS 134
>Z83108-2|CAB05510.1| 820|Caenorhabditis elegans Hypothetical
protein F44E5.2 protein.
Length = 820
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 100 TIIHVFILQYFLYNLFNYIXSTIHVD 23
T+ H + L+ LFN+I S+ H+D
Sbjct: 314 TLKHDVFMSQCLHALFNFIKSSYHID 339
>Z72502-8|CAD44097.1| 374|Caenorhabditis elegans Hypothetical
protein C08B6.11 protein.
Length = 374
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 160 FFFTIKLFYILFIRNKYILITIIHVFILQYFLYNLFNYI 44
F+F IK + + +I +I +FI YF + + YI
Sbjct: 331 FYFAIKSRWSIVFLIFFIAFPLICIFITLYFYFYVMPYI 369
>AF000197-3|AAB52898.2| 109|Caenorhabditis elegans Hypothetical
protein T21G5.2 protein.
Length = 109
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 115 KYILITIIHVFILQYFLYNLFNYIXSTIH-VDYTFSYF 5
++++ T IH+F L+N F +I +I V +FS F
Sbjct: 35 QFVIFTYIHIFSYLCVLFNYFLFIDLSISTVIVSFSRF 72
>AF101316-4|AAC69229.2| 296|Caenorhabditis elegans Serpentine
receptor, class sx protein8 protein.
Length = 296
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -2
Query: 148 IKLFYILFIRNKYILITIIHVFILQYFLYNLFNYIXSTIHVDYTFSY 8
+K I+FI + Y+ + +I+ FIL + + N + I + S+
Sbjct: 204 LKFSAIIFIISNYLSVFVINAFILYGYAGDELNGVIGNISIFSMISF 250
>AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical
protein C23H5.7 protein.
Length = 644
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 103 ITIIHVFILQYFLYNLFNYIXSTIHVDYTFSYF 5
I + H YFL++L+ I ++ FSY+
Sbjct: 183 IVLFHWNACLYFLFSLYEGITEESQTEFGFSYY 215
>AC006777-6|AAK72307.1| 517|Caenorhabditis elegans Hypothetical
protein Y46H3D.4 protein.
Length = 517
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 139 FYILFIRNKYILITIIHVFILQY 71
F+ILF N ++ I+ VF++ Y
Sbjct: 480 FFILFSNNSILIFFILKVFVIFY 502
>AF038608-2|AAU05595.1| 297|Caenorhabditis elegans Serpentine
receptor, class z protein70 protein.
Length = 297
Score = 24.6 bits (51), Expect = 9.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 151 TIKLFYILFIRNKYILITIIHVFILQY-FLYNLFNYIXSTIHVDYTF 14
T+K F+ + + Y I +I V LQY L N+ Y S +D TF
Sbjct: 61 TVKHFFWMVRTSYYFFIALIVVLFLQYPPLRNIIFY--SLFIIDQTF 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,008
Number of Sequences: 27780
Number of extensions: 32694
Number of successful extensions: 154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 12,740,198
effective HSP length: 34
effective length of database: 11,795,678
effective search space used: 224117882
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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