Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17i10
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         28   0.87 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   6.1  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    25   8.1  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 201 HCREESPILSRRKHYFVGRFELLAWPVFPVRQDS 302
           HCR  SP  +    Y      LLAWP +  + DS
Sbjct: 266 HCRNSSPHDNPILEYLFALVSLLAWPFYRRKLDS 299


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 244 ISSGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLVD 351
           IS  D ++W GL   YA++  +  A K+     ++D
Sbjct: 679 ISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILD 714


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 82  GNTAETSLKFQYVGMKTTARVRIRRVL 2
           G+TA     F Y G+K  A  ++RRVL
Sbjct: 81  GHTATLYRVFPYAGIKFVAYEQVRRVL 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,547
Number of Sequences: 5004
Number of extensions: 39750
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)