Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17i08
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 44 2e-05
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 42 7e-05
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 40 4e-04
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 38 0.001
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 37 0.003
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 31 0.22
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 29 0.51
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 29 0.89
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi... 27 2.1
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 27 2.7
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 3.6
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 3.6
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 27 3.6
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 3.6
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 4.8
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 8.3
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 8.3
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe... 25 8.3
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +3
Query: 30 PIILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIILTMEKPRSDVFPFLDRVVYLCLG 209
P+I D D D ++ ++S + + K GT ++ + + +F D V + G
Sbjct: 237 PLIQCWDNNMRDFDSISVIDILSRIKVLSHKLGTTLVAIVSQASDRIFHMFDMVTLMYEG 296
Query: 210 DVVYAGPTRNLLDYFGSIGF 269
+ ++ GPT L YF +GF
Sbjct: 297 EQIFYGPTSRLKPYFLDLGF 316
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +3
Query: 6 IGVQLIRDP-IILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIILTMEKPRSDVFPFL 182
I V+L P ILLLDEP LD + ++++ IL A+ G +I+ ++ +P S +
Sbjct: 909 IAVELSARPGSILLLDEPANGLDSQSAWMLVCILQKLARS-GLSILCSVSQPSSRILELF 967
Query: 183 DRVVYLCL-GDVVY 221
D ++ L L G+ VY
Sbjct: 968 DMMLILDLNGNTVY 981
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 42.3 bits (95), Expect = 7e-05
Identities = 25/109 (22%), Positives = 41/109 (37%)
Frame = +3
Query: 30 PIILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIILTMEKPRSDVFPFLDRVVYLCLG 209
P I D T LD + +++L A + +T + ++ DR+ L G
Sbjct: 327 PTIACWDNSTRGLDSSTAFEFVNVLRTCANELKMTSFVTAYQASEKIYKLFDRICVLYAG 386
Query: 210 DVVYAGPTRNLLDYFGSIGFPCPQLENPLMYYLCLSTVDRRSRERFIES 356
+Y GP YF +GF C E + +S R + E+
Sbjct: 387 RQIYYGPADKAKQYFLDMGFDCHPRETTPDFLTAISDPKARFPRKGFEN 435
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 39.9 bits (89), Expect = 4e-04
Identities = 29/81 (35%), Positives = 38/81 (46%)
Frame = +3
Query: 18 LIRDPIILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIILTMEKPRSDVFPFLDRVVY 197
+I DP ILLLDE T LD + LV L NA++ T +I R D +V
Sbjct: 582 VISDPKILLLDEATSALDSKSEVLVQKALDNASRSRTTIVI----AHRLSTIRNADNIVV 637
Query: 198 LCLGDVVYAGPTRNLLDYFGS 260
+ G +V G LLD G+
Sbjct: 638 VNAGKIVEQGSHNELLDLNGA 658
Score = 28.7 bits (61), Expect = 0.89
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 18 LIRDPIILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIIL 143
LIR+P ILLLDE T LD + +V L NAA + T + +
Sbjct: 1273 LIRNPKILLLDEATSALDSHSEKVVQEAL-NAASQGRTTVAI 1313
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/76 (27%), Positives = 41/76 (53%)
Frame = +3
Query: 3 VIGVQLIRDPIILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIILTMEKPRSDVFPFL 182
++ +L++ P +LLLDEP LD + ++ S+L + I+L++ +P+ + F+
Sbjct: 158 MLASKLVQRPQLLLLDEPYAGLDVTSRSVLSSLLGEMSNHCSPKIVLSL-RPQDKIPDFI 216
Query: 183 DRVVYLCLGDVVYAGP 230
V+ L + Y GP
Sbjct: 217 THVLELKNKKITYQGP 232
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +3
Query: 18 LIRDPIILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIILT 146
L+RD IL+LDEPT LDP+ LV+ + A +K T +++T
Sbjct: 585 LLRDTEILILDEPTSALDPITKNLVMDAI-RAHRKGKTTLVIT 626
Score = 28.7 bits (61), Expect = 0.89
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = +3
Query: 18 LIRDPIILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIILTMEKPRSDVFPFLDRVVY 197
L+R+P +L+LDE T LD ++ L+ + N + T +I+T + + DR++
Sbjct: 1250 LLRNPRLLILDECTSALDSKSSLLLEKTIQNLS---CTVLIITHQ---PSLMKLADRIIV 1303
Query: 198 LCLGDVVYAGPTRNLLD 248
+ G V +G L++
Sbjct: 1304 MDSGIVKESGSFDELMN 1320
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 30.7 bits (66), Expect = 0.22
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 599 KIYR*TKKSHKHLLESVFVKIEYCS*SP*VQHPHCLK 489
K+YR TK SHK L ++ + S P + HP+ LK
Sbjct: 153 KVYRKTKTSHKKRLNTMVYFLREWSIQPKLDHPNILK 189
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 29.5 bits (63), Expect = 0.51
Identities = 23/76 (30%), Positives = 34/76 (44%)
Frame = +3
Query: 18 LIRDPIILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIILTMEKPRSDVFPFLDRVVY 197
+++DP I+LLDE T LD NT I N TAI++ R D ++
Sbjct: 735 ILKDPSIILLDEATSALD-TNTERQIQAALNRLASGRTAIVIA---HRLSTITNADLILC 790
Query: 198 LCLGDVVYAGPTRNLL 245
+ G +V G L+
Sbjct: 791 ISNGRIVETGTHEELI 806
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 28.7 bits (61), Expect = 0.89
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 18 LIRDPIILLLDEPTWDLDPLNTYLVISILSN 110
+ ++P ILLLDEPT LD +N + + L N
Sbjct: 563 MFKNPDILLLDEPTNHLDVVNVAWLENFLVN 593
>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 244 SKFLVGPAYTTSPRHRYTTR 185
S+F VGP Y+ +PR R T R
Sbjct: 98 SRFEVGPVYSANPRDRKTIR 117
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.1 bits (57), Expect = 2.7
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +3
Query: 18 LIRDPIILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIILTMEKPRSDVFPFLDRVVY 197
L+R +LLLDE T DLD L +++ L + I+ + + +V+
Sbjct: 143 LLRPFEVLLLDEVTVDLDVLARADLLNFLQEETEVRNATIVYATH-IFDGLAEWPTHLVH 201
Query: 198 LCLGDVVYAGP 230
L LG +V GP
Sbjct: 202 LSLGRIVDYGP 212
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 306 LCLSTVDRRSRERFIESNHQIAALVEKFKIEGQAIMQGNLHENNRIVNPN 455
L VD +ER +E N ++ + EK +G+A+ Q + +I N N
Sbjct: 194 LVREAVDHIDKERELEINDELKKISEKLDKKGEAVGQALELTSPKIDNKN 243
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 722 TNSV-HDADKISSDHCVEDQTAFSNESPLIILCLIVENPKYEK 597
TNS+ D + D +ED F+N+S + + ++VEN + K
Sbjct: 992 TNSLMEDVGPENVDMDIEDNEIFTNQSTMSVPSMLVENEESPK 1034
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 337 GSASLNQTTRSRRWSRNLRSKVK 405
GS + T SR+WS N SK+K
Sbjct: 247 GSRKRKRATVSRKWSTNSESKIK 269
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 397 SILNFSTSAAIWWFDSMKRSRDLLSTVERHR*YMSGFSNC 278
S++ ++ AI WF+ MK++R L H +GFS C
Sbjct: 233 SLVVCNSEMAISWFNCMKKTRYLHDQEFMHLDIDTGFSMC 272
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 21 IRDPIILLLDEPTWDLDPLNTYLVISILSNAAKKYGTAIIL 143
+++P IL+LDEPT LD + + L+ A K++ +IL
Sbjct: 652 LQNPHILILDEPTNHLDMES----MDALTRAVKRFQGGVIL 688
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 498 VWMLY-LRTLATIFNLNKHGFKQMFMRLLCLPIYFFILWIF 617
+W L+ ++T T+ +H F F L+ P FF+ W +
Sbjct: 264 LWYLWDIKTGLTVERFFQH-FLARFFCLIFFPFLFFLFWFY 303
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = +1
Query: 250 TSAASGSRVHS*KTRSCTTCASPPSIGDHGSASLNQTTRSRRWSRNLRSKVKPSCRVIFM 429
T+++ S S KTR+ T + I G + N + +++N KP+ +VI
Sbjct: 237 TTSSPTSNTSSSKTRNNTGYTAKAPIIKRGQSVDNSAQERKTFAKNPTKNSKPAGQVIPS 296
Query: 430 KTIVS*TLIKYK*TTGSLADL 492
S TL ++ G+++++
Sbjct: 297 SPFTS-TLSRFPSLEGAVSEI 316
>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 510 YLRTLATIFNLNKHGFKQMFMRLLCLPIYFFI-LWIFYNEAKD 635
++ TIF K+ F +L C ++FF+ L++F + D
Sbjct: 91 HMHDSTTIFKDVSSRQKRSFFKLACFAVFFFVYLFLFVSRLVD 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,243
Number of Sequences: 5004
Number of extensions: 69666
Number of successful extensions: 224
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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