Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17i04
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 30 0.27
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 27 2.5
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 26 4.3
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 4.3
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 26 4.3
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 5.7
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 26 5.7
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 25 7.6
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 10.0
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 25 10.0
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 30.3 bits (65), Expect = 0.27
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 201 IQQLERTLNEKKGNEKQLQETWKVLTVLKNNNQPII 308
IQ +ER +EK G+E L + +VL LK P+I
Sbjct: 30 IQTIERFQDEKSGSESVLSQLNRVLMYLKGEEIPLI 65
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 607 SFRFNFDLTSDQIENGNISTVT 672
+F F+FD+TSD N ++TVT
Sbjct: 82 AFAFDFDVTSDDSINSALTTVT 103
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 26.2 bits (55), Expect = 4.3
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Frame = +3
Query: 57 NKMPKPTRLHNKGKSTSLQKPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKK 236
NK+ K H+ STS +K ++ K+ + D E + Q LEL IQQLER NE
Sbjct: 401 NKLLKEEHKHH---STS-EKLEELSKYVASIQDKERNNGQNALELQARIQQLERR-NEDM 455
Query: 237 GNEKQLQETWK-----VLTVLKNNNQPIIRKRQLMRTHFGDY 347
N+ +E + + LK N + R R L+ + +Y
Sbjct: 456 YNKLLAEEIIRRKLHNDIQELKGNIRVFCRVRPLLPSEESEY 497
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 167 RFLGVYTFGLMFINFTRFL*RCRFA 93
RFLG+ T M + ++L RCRFA
Sbjct: 64 RFLGMETVNKMLDDAIQYLERCRFA 88
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 421 IRAYIKVILSTFLDNFFSSEAILAR*SPKCV 329
++ + ILST ++F+ +AIL+ +P CV
Sbjct: 183 LQPIVHPILSTACNHFYEKDAILSLLNPTCV 213
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/63 (22%), Positives = 32/63 (50%)
Frame = +3
Query: 48 NIINKMPKPTRLHNKGKSTSLQKPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLN 227
+I+ + + LH K + ++ +I + + + EE LR+ ELC I+ L+ +
Sbjct: 1119 SILKDVQELKSLHTKEANQLSERIKEISEMLEQSIATEEKLRRKNSELCDIIEALKYQIQ 1178
Query: 228 EKK 236
+++
Sbjct: 1179 DQE 1181
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 419 DMNHGR*WLPNLASNHTFTTVLRYT*FKFNCFQ*QVKSKYQKYRKNQRQHFLGN 580
++N + W P+ A NH F T ++ + C Q K R R H +GN
Sbjct: 440 ELNPLKRWTPDQAKNHPFITGASFSQY---CIDKQ-KPLLTTQRTRNRSHTIGN 489
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 7.6
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +3
Query: 123 KIDKHESEGVDPEESLRQFQLELCWCIQQLERTLN-----EK-KGNEKQLQETWKVLTVL 284
+++K E D ++ E C +Q L +L+ EK + +K+++ET L L
Sbjct: 91 EMEKQIQELKDEVSVVKTLYKEKCIELQALNNSLSPAEIREKIQSIDKEIEETSSKLESL 150
Query: 285 KNNNQPIIRKRQLMRTHFG-DYRAKMASEEKKL 380
+N I K + +T D+ K S KK+
Sbjct: 151 RNGTVKQISKEAMQKTDKNYDFAKKGFSNRKKM 183
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +3
Query: 201 IQQLERTLNE-KKGNEK---QLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASE 368
IQ LER ++E +K E QLQ+ +++N +P+I + ++ R +++S
Sbjct: 787 IQTLERRISETEKELESYAGQLQDAKNEEHRIRDNQRPVIEEIRIYREKIQTETQRLSSL 846
Query: 369 EKKLSK 386
+ +LS+
Sbjct: 847 QTELSR 852
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 412 MPGYEPWKIVVAQFGI 459
+PG+ PWKIV+A F I
Sbjct: 43 IPGF-PWKIVIAGFSI 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,792
Number of Sequences: 5004
Number of extensions: 50652
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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