Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17i04
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354...    33   0.28 
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574...    32   0.48 
08_02_0002 + 11173365-11173512,11173528-11178470                       31   0.84 
03_02_0719 + 10654842-10654977,10655039-10655124,10655226-106570...    29   4.5  
05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737           28   7.8  

>07_03_1391 +
           26234647-26235026,26235112-26235226,26235345-26235410,
           26235519-26235607,26235717-26235807,26235917-26236063,
           26236160-26236252,26236373-26236474,26236581-26237255
          Length = 585

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +3

Query: 207 QLERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSK 386
           ++E +L+ K   ++ LQ   K+  V      P    R+L+RT F D  A  A E  K   
Sbjct: 39  RIEGSLSFKTREQQSLQVETKIPAVTSPRAAPAPMPRELLRTRFADAAAAAAPESPKHEA 98

Query: 387 NVLRITLIY 413
             + +  +Y
Sbjct: 99  AAVTLQKVY 107


>07_01_1133 -
           10550799-10551137,10552195-10552254,10555693-10557401,
           10557534-10557616,10577533-10578074
          Length = 910

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +3

Query: 66  PKPTRLHNKGKSTSLQKPCKIDKHES--EGVDPEESLRQFQ--LELCWCIQQLERTLNEK 233
           P    +H+    + L+K  ++   E+  E ++ +E L   +  + +C CIQ   + +  K
Sbjct: 731 PSMAGIHDVFHVSQLKKCLRVPTEEADPERIEIQEDLTYVEKPVRICECIQGAYKEII-K 789

Query: 234 KGNEKQLQETWKVLTVLK 287
           KG  + LQ+ WK    LK
Sbjct: 790 KGENQNLQQMWKARNDLK 807


>08_02_0002 + 11173365-11173512,11173528-11178470
          Length = 1696

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 57   NKMPKPTRLHNKGKSTSLQKPCKIDKHESEGVDPEESLRQFQL 185
            N +P  + +  +G ++   KP K+D  E   ++PEE + +++L
Sbjct: 1096 NTVPYISEVRKRGGTSPSPKPDKLDNLEVPNLEPEERINEYEL 1138


>03_02_0719 +
           10654842-10654977,10655039-10655124,10655226-10657001,
           10657782-10657926,10658017-10658735
          Length = 953

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +3

Query: 84  HNKGKSTS--LQKPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLN-EKKGNEKQL 254
           +NKGKS S  LQ    + K E  G   + S  Q   + C   Q      N +K   +K+ 
Sbjct: 326 NNKGKSISLALQAKVNVQKREGLGSSGKNSGGQKDRDECRTSQPFRSQSNAQKNKQQKKP 385

Query: 255 QETWKVLTVLKNNNQ 299
             +     VL+ NNQ
Sbjct: 386 SSSGTSSPVLRQNNQ 400


>05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737
          Length = 767

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 150 HLRTHVYQFYKVSVKMSICLYCAILL 73
           +LR  ++ FY +++  S+C YC  LL
Sbjct: 108 NLRAALFIFYSLALAHSVCFYCWFLL 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,075
Number of Sequences: 37544
Number of extensions: 273870
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)