Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17i04
         (674 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023603-1|AAY85003.1|  206|Drosophila melanogaster IP06581p pro...    81   1e-15
AE014297-2612|AAF55622.1|  200|Drosophila melanogaster CG14286-P...    81   1e-15
AE014134-625|AAF51094.1|  676|Drosophila melanogaster CG3213-PA ...    33   0.36 
AY058630-1|AAL13859.1|  487|Drosophila melanogaster LD32783p pro...    30   3.3  
AF025540-1|AAC14018.1|  487|Drosophila melanogaster zinc finger ...    30   3.3  
AE014134-2742|AAF53549.1|  487|Drosophila melanogaster CG4694-PA...    30   3.3  
AY129442-1|AAM76184.1| 1124|Drosophila melanogaster LD16566p pro...    29   4.4  
AY129439-1|AAM76181.1|  751|Drosophila melanogaster LD08185p pro...    29   4.4  
AY119103-1|AAM50963.1|  853|Drosophila melanogaster RE06730p pro...    29   4.4  
AE014297-2882|AAF55818.1|  853|Drosophila melanogaster CG3822-PA...    29   4.4  
AE014296-2184|AAF49884.1| 1087|Drosophila melanogaster CG10971-P...    29   4.4  
AE014296-2183|AAF49885.2| 1124|Drosophila melanogaster CG10971-P...    29   4.4  
AE014297-3578|ABI31205.1| 1728|Drosophila melanogaster CG34100-P...    29   7.7  
AE014297-3577|AAN14004.2| 1918|Drosophila melanogaster CG34100-P...    29   7.7  

>BT023603-1|AAY85003.1|  206|Drosophila melanogaster IP06581p
           protein.
          Length = 206

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
 Frame = +3

Query: 81  LHNKGKSTSLQKPCKID---KHESEGVDPE----ESLRQFQLELCWCIQQLERTLNEKKG 239
           +H +  + S+ KP  I    K  +   +P     + + QF++ELCWC+QQL+  L+  K 
Sbjct: 7   MHKRRTAKSINKPPPIQGAIKKPTPVAEPPSIDADLVTQFEVELCWCVQQLQTALDSGKL 66

Query: 240 NEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKL 380
            +K  ++T K + VL ++  P+IRKRQ+M+   GDYRAKM  EE+KL
Sbjct: 67  AQKVAEDTAKNIKVLTSSTAPLIRKRQVMKLALGDYRAKMQQEEQKL 113


>AE014297-2612|AAF55622.1|  200|Drosophila melanogaster CG14286-PA
           protein.
          Length = 200

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
 Frame = +3

Query: 81  LHNKGKSTSLQKPCKID---KHESEGVDPE----ESLRQFQLELCWCIQQLERTLNEKKG 239
           +H +  + S+ KP  I    K  +   +P     + + QF++ELCWC+QQL+  L+  K 
Sbjct: 1   MHKRRTAKSINKPPPIQGAIKKPTPVAEPPSIDADLVTQFEVELCWCVQQLQTALDSGKL 60

Query: 240 NEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKL 380
            +K  ++T K + VL ++  P+IRKRQ+M+   GDYRAKM  EE+KL
Sbjct: 61  AQKVAEDTAKNIKVLTSSTAPLIRKRQVMKLALGDYRAKMQQEEQKL 107


>AE014134-625|AAF51094.1|  676|Drosophila melanogaster CG3213-PA
           protein.
          Length = 676

 Score = 33.1 bits (72), Expect = 0.36
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +3

Query: 114 KPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQETWKVLTVLKNN 293
           K CK    +   VD    L Q Q+EL     +LE  L ++    +QL+ T   L  L+  
Sbjct: 528 KACKTQMEQQPNVDVRPQLAQCQMELTQARNELEELLRQRDLFCEQLKSTQDDLDTLRTE 587

Query: 294 NQPII 308
           +  II
Sbjct: 588 SAKII 592


>AY058630-1|AAL13859.1|  487|Drosophila melanogaster LD32783p
           protein.
          Length = 487

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/89 (21%), Positives = 41/89 (46%)
 Frame = +3

Query: 114 KPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQETWKVLTVLKNN 293
           +P  + +H     +PE+S R F+  L  C    +R  N K+ +E +     + +   +  
Sbjct: 109 RPYDLKRHLMVHNNPEKSHRTFKCSL--CTYSSDRKANLKRHHELRHSGIEEAIQTAEEL 166

Query: 294 NQPIIRKRQLMRTHFGDYRAKMASEEKKL 380
            Q ++ ++Q+++ H   Y+     + K L
Sbjct: 167 RQEMLLEKQMLKEHKLKYQITEKQDLKNL 195


>AF025540-1|AAC14018.1|  487|Drosophila melanogaster zinc finger
           protein HER protein.
          Length = 487

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/89 (21%), Positives = 41/89 (46%)
 Frame = +3

Query: 114 KPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQETWKVLTVLKNN 293
           +P  + +H     +PE+S R F+  L  C    +R  N K+ +E +     + +   +  
Sbjct: 109 RPYDLKRHLMVHNNPEKSHRTFKCSL--CTYSSDRKANLKRHHELRHSGIEEAIQTAEEL 166

Query: 294 NQPIIRKRQLMRTHFGDYRAKMASEEKKL 380
            Q ++ ++Q+++ H   Y+     + K L
Sbjct: 167 RQEMLLEKQMLKEHKLKYQITEKQDLKNL 195


>AE014134-2742|AAF53549.1|  487|Drosophila melanogaster CG4694-PA
           protein.
          Length = 487

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/89 (21%), Positives = 41/89 (46%)
 Frame = +3

Query: 114 KPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQETWKVLTVLKNN 293
           +P  + +H     +PE+S R F+  L  C    +R  N K+ +E +     + +   +  
Sbjct: 109 RPYDLKRHLMVHNNPEKSHRTFKCSL--CTYSSDRKANLKRHHELRHSGIEEAIQTAEEL 166

Query: 294 NQPIIRKRQLMRTHFGDYRAKMASEEKKL 380
            Q ++ ++Q+++ H   Y+     + K L
Sbjct: 167 RQEMLLEKQMLKEHKLKYQITEKQDLKNL 195


>AY129442-1|AAM76184.1| 1124|Drosophila melanogaster LD16566p
           protein.
          Length = 1124

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +3

Query: 207 QLERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSK 386
           QL+ TLN  + NE  LQ+T +++  L+  N    ++ +       D ++K++  E KL++
Sbjct: 666 QLQLTLNNLEQNESALQQTQEIVNQLRQENASAGQRNE-------DLQSKLSLTEVKLTQ 718

Query: 387 NVLRITLI 410
              +I  +
Sbjct: 719 ATQQIDAV 726


>AY129439-1|AAM76181.1|  751|Drosophila melanogaster LD08185p
           protein.
          Length = 751

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +3

Query: 207 QLERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSK 386
           QL+ TLN  + NE  LQ+T +++  L+  N    ++ +       D ++K++  E KL++
Sbjct: 293 QLQLTLNNLEQNESALQQTQEIVNQLRQENASAGQRNE-------DLQSKLSLTEVKLTQ 345

Query: 387 NVLRITLI 410
              +I  +
Sbjct: 346 ATQQIDAV 353


>AY119103-1|AAM50963.1|  853|Drosophila melanogaster RE06730p
           protein.
          Length = 853

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 264 WKVLTVLKNNNQPIIRKRQLMRTH 335
           WK  T++  NN  I+R ++L++ H
Sbjct: 157 WKTFTIIYENNDGIVRLQELLKAH 180


>AE014297-2882|AAF55818.1|  853|Drosophila melanogaster CG3822-PA
           protein.
          Length = 853

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 264 WKVLTVLKNNNQPIIRKRQLMRTH 335
           WK  T++  NN  I+R ++L++ H
Sbjct: 157 WKTFTIIYENNDGIVRLQELLKAH 180


>AE014296-2184|AAF49884.1| 1087|Drosophila melanogaster CG10971-PB,
           isoform B protein.
          Length = 1087

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +3

Query: 207 QLERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSK 386
           QL+ TLN  + NE  LQ+T +++  L+  N    ++ +       D ++K++  E KL++
Sbjct: 629 QLQLTLNNLEQNESALQQTQEIVNQLRQENASAGQRNE-------DLQSKLSLTEVKLTQ 681

Query: 387 NVLRITLI 410
              +I  +
Sbjct: 682 ATQQIDAV 689


>AE014296-2183|AAF49885.2| 1124|Drosophila melanogaster CG10971-PA,
           isoform A protein.
          Length = 1124

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 18/68 (26%), Positives = 36/68 (52%)
 Frame = +3

Query: 207 QLERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSK 386
           QL+ TLN  + NE  LQ+T +++  L+  N    ++ +       D ++K++  E KL++
Sbjct: 666 QLQLTLNNLEQNESALQQTQEIVNQLRQENASAGQRNE-------DLQSKLSLTEVKLTQ 718

Query: 387 NVLRITLI 410
              +I  +
Sbjct: 719 ATQQIDAV 726


>AE014297-3578|ABI31205.1| 1728|Drosophila melanogaster CG34100-PB,
           isoform B protein.
          Length = 1728

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 20/82 (24%), Positives = 37/82 (45%)
 Frame = +3

Query: 126 IDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQETWKVLTVLKNNNQPI 305
           + K   + V  ++ L+ F  E+    +Q  R    ++  +K+  + W  L    +  Q  
Sbjct: 49  VAKFRRKCVRMQQRLQDFAQEIS--DRQTARQAKRQQKVQKKTHDRWLQLEPTSHEEQQP 106

Query: 306 IRKRQLMRTHFGDYRAKMASEE 371
           IRKR+++    GD  A  A+ E
Sbjct: 107 IRKRRMVSESDGDSTAAAAAAE 128


>AE014297-3577|AAN14004.2| 1918|Drosophila melanogaster CG34100-PA,
           isoform A protein.
          Length = 1918

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 20/82 (24%), Positives = 37/82 (45%)
 Frame = +3

Query: 126 IDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQETWKVLTVLKNNNQPI 305
           + K   + V  ++ L+ F  E+    +Q  R    ++  +K+  + W  L    +  Q  
Sbjct: 239 VAKFRRKCVRMQQRLQDFAQEIS--DRQTARQAKRQQKVQKKTHDRWLQLEPTSHEEQQP 296

Query: 306 IRKRQLMRTHFGDYRAKMASEE 371
           IRKR+++    GD  A  A+ E
Sbjct: 297 IRKRRMVSESDGDSTAAAAAAE 318


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,873,104
Number of Sequences: 53049
Number of extensions: 507676
Number of successful extensions: 1670
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1670
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)