Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17i04
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   2.0  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   2.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.1  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   6.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.1  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +3

Query: 231 KKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSKNV 392
           KK  +KQ +   KV+  L  N   +             YR K   E KKL  NV
Sbjct: 77  KKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEEEAKKLGINV 130


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +3

Query: 231 KKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSKNV 392
           KK  +KQ +   KV+  L  N   +             YR K   E KKL  NV
Sbjct: 77  KKCTDKQREVIKKVIKFLVENKPELWDSLANKYDPDKKYRVKFEEEAKKLGINV 130


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 222 KFALTVGYTNITRAETVVTIPRGLHLRTHV 133
           K  L+V  +NIT    + T P G  + TH+
Sbjct: 385 KMTLSVNESNITWPGRLQTKPEGFMIPTHL 414


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 105 SLQKPCKIDKHESEGVD 155
           +LQ+P  +DK+ +EG++
Sbjct: 359 TLQRPQDVDKYPAEGLE 375


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 276 LRLSMFLAIVFRFLSFHLKFALTVGYTN 193
           L+  + + + FR+L   LKF+    Y N
Sbjct: 58  LQFDVHMMLQFRYLDARLKFSNIAPYLN 85


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 633 SQIEIKTERLISCSLKYRFPKK 568
           + I +K+ +LI C  KY+  K+
Sbjct: 110 ADIHLKSSKLIKCFAKYKTLKE 131


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +3

Query: 189 LCWCIQQLERTLNEKK-GNEK 248
           LC  +Q LER  +EK  GN K
Sbjct: 132 LCDLVQGLERLFDEKNAGNNK 152


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 129 DKHESEGVDPEESLRQFQLELCWCIQQLERTLNEK 233
           +K  S  VD    L +F + + W I ++    NEK
Sbjct: 188 EKSGSNVVDVGVDLSEFYMSVEWDILEVPAVRNEK 222


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 129 DKHESEGVDPEESLRQFQLELCWCIQQLERTLNEK 233
           +K  S  VD    L +F + + W I ++    NEK
Sbjct: 188 EKSGSNVVDVGVDLSEFYMSVEWDILEVPAVRNEK 222


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 452 NWATTIFHGSYPGIYQSDSQYIFRQFF 372
           NW + +F+G+    ++   Q+ F QF+
Sbjct: 170 NWLS-VFNGTGWTFHEGRKQFYFHQFY 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,871
Number of Sequences: 438
Number of extensions: 3397
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)