Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17h23
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical...    30   1.6  
U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily ass...    28   4.8  
AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   4.8  
Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical
            protein Y39G10AR.3 protein.
          Length = 998

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/60 (23%), Positives = 32/60 (53%)
 Frame = +1

Query: 61   RILDAIAETNTKVDSVQTQLDGLEESFQPLDGLPAQLTDFNTKISEIQSILTGDTAPDPP 240
            +I+DA A+ N+ +  ++     ++E     +G   Q++D  +K+ E+Q+  +     +PP
Sbjct: 912  KIMDATAKQNSLLREIEDLKSKIKEQDTTFEGHRNQMSDLESKLQELQAKQSFLRKSEPP 971


>U22833-2|AAA64322.2|  707|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 161 protein.
          Length = 707

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 497 FPEYSKLVYYSKAIKNFE-MHNEMIIYYDLK 586
           F E   + Y S+ I   E MHN  ++Y DLK
Sbjct: 290 FTEQEMIFYASEVILGLEHMHNRFVVYRDLK 320


>AF016445-4|AAC69058.1|  312|Caenorhabditis elegans Hypothetical
           protein T05B4.8 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +3

Query: 366 TAAQSRFLRDLQLTIIANCVKKLNCIIKIPCYIVPNAGLPTFIIFLNTLNLC 521
           TA  +  ++D++    ANC K      +   Y  PN   P       TL+ C
Sbjct: 145 TATPAAVVQDMKTAAAANCPKTCGLCCQTDAYYCPNVAYPRLNCASITLSQC 196


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 16   NYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQLDGLEESFQPLDGLPAQLTD 177
            N +L  I  K N L +  D IAET+ KV+ ++     +      LD LPA+  D
Sbjct: 2720 NKLLAKIDEKLNSLPK--DQIAETHRKVEDIKVTKADIVAQIDVLDKLPAKDID 2771


>Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical
           protein F41D3.4 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 376 CAAVQYLGKFFDFNSGKHGSFDTRKSVVLQSGHHFA 269
           C  V Y  KFF+ ++G +  FD R       G HF+
Sbjct: 616 CVLVDYKPKFFNPHTGLYRMFDDRGFSYYTMGLHFS 651


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 142 QPLDGLPAQLTDFNTKISEIQSILTGDTAP 231
           +PLD  P QL   N     I ++LTG T P
Sbjct: 252 KPLDDPPIQLNPLNGTSDIINTVLTGKTDP 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,290,621
Number of Sequences: 27780
Number of extensions: 264219
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)