Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17h22
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    29   2.5  
07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392...    29   4.4  
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910...    28   5.8  
02_02_0083 + 6628116-6628310,6628383-6629057                           28   5.8  
07_03_0118 - 13600948-13602174                                         28   7.6  

>04_04_1105 -
           30942735-30942791,30943116-30943466,30943670-30943762,
           30943869-30944072,30944155-30944399,30945019-30945877,
           30946070-30946936,30947113-30947562
          Length = 1041

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
 Frame = +1

Query: 43  PLRVQKIRKIVKSAQIIVKVVSKEAEGDE-----ERSRENRVTRRPLGQKLLKKNPKN-- 201
           PL V++     +S  ++  +VS+E   +E       + + R  ++P GQ +  K  K   
Sbjct: 675 PLEVRRALSKKRSNSLLNHLVSEECSDEEFVHDFPDAEQARDCQKPSGQNIGSKRKKGHR 734

Query: 202 -------RVFTAQSGVRLPISIDDVHF 261
                  +V+T   GVRLP+S+++  F
Sbjct: 735 RGPTLCVKVWTLPEGVRLPVSLNNSGF 761


>07_03_1562 - 27738369-27738568,27738767-27738962,27739079-27739230,
            27739775-27739832,27739923-27740038,27740117-27740237,
            27740348-27740635,27740817-27740987,27741091-27741741,
            27742515-27742676,27742764-27743904,27743992-27744152,
            27744239-27744564,27745678-27745825
          Length = 1296

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
 Frame = +1

Query: 199  NRVFTAQSGVRLPISIDDVHFF*CSFKALSAIH-LRPEFRIFPVQTDRAAP*KVETTWTR 375
            +RVF A  G+   +S+ +  ++  + KA+SAI+ L P   IF  Q  + +   V      
Sbjct: 730  SRVFAALQGLITSLSLPEKIWYGAADKAISAIYALHPAPEIFAAQIVKKSLNSVFGVLGT 789

Query: 376  GPPSTRNWTKWGSFKDS-PRSPLPKAVWITTISH 474
               S  N T+ GS   S P + L + ++I  ISH
Sbjct: 790  DCMSNENETQNGSMLSSTPATNLGRFLFI--ISH 821


>04_04_0996 +
           29990255-29990425,29990797-29990841,29991024-29991098,
           29991481-29991691,29992057-29992442,29993202-29993425,
           29993529-29993664,29993699-29993761,29993842-29994021
          Length = 496

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 31  HDNRPLRVQKIRKIVKSAQIIVKVVSKEAEGDEERSRENRVTRRPLGQKLLKKN 192
           H + P R Q+     K+  ++++ V KE EG+  R       R+P   K+++ N
Sbjct: 369 HSSEPCRYQENLATKKNPTVLIEEVKKELEGELSRQHPCPNCRQP-NPKIVEDN 421


>02_02_0083 + 6628116-6628310,6628383-6629057
          Length = 289

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 464 VVIQTAFGRGLLGLSLKLPHFVQFLVEGGPRVH 366
           V I  AFG    G  + LPH V++L   GP +H
Sbjct: 83  VAIFNAFG----GFKIFLPHIVKWLARAGPELH 111


>07_03_0118 - 13600948-13602174
          Length = 408

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 230 ASRFRSMTCIFSSAALKP*VPYTFDPSFGFFRYKLTELHPKKWKPR 367
           ASRF           ++P     F  SFG F      LHP+KWK R
Sbjct: 240 ASRFEESLAAMKELGVRP-SSGMFPYSFGLF----ARLHPRKWKGR 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,751,825
Number of Sequences: 37544
Number of extensions: 424495
Number of successful extensions: 1042
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)