Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17h22
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium chann...    30   1.7  
U41034-3|AAA82380.2|  127|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL132863-10|CAN99717.1|  181|Caenorhabditis elegans Hypothetical...    29   2.9  
Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF078786-1|AAY43998.1|  102|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U39995-4|AAF99993.2|  675|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 2 protein.
          Length = 675

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 127 EERSRENRVTRRPLGQKLLKKNP-KNRVFTAQSGVRLPI 240
           EER  +NRV  + L +KL KK P K +  T Q+ V   I
Sbjct: 385 EERINQNRVLAKKLREKLEKKRPIKKKSLTHQNSVTAEI 423


>U41034-3|AAA82380.2|  127|Caenorhabditis elegans Hypothetical
           protein M02D8.2 protein.
          Length = 127

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 55  QKIRKIVKSAQIIVKVVSKEAEGDEERSRENRV 153
           +K+RK +K  +  +++  K+ + +E+  R NRV
Sbjct: 91  KKLRKTIKKRECKIRIFKKKRDDNEDEHRRNRV 123


>AL132863-10|CAN99717.1|  181|Caenorhabditis elegans Hypothetical
           protein Y37H2A.14 protein.
          Length = 181

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 19  EPKRHDNRPLRVQKIRKIVKSAQIIVKVVSKEAE--GDEERSRENRVTRRPLGQKLLKK 189
           +PK HD  P ++  ++K  KS +   K + + A    DE    E++V +    QK LKK
Sbjct: 76  DPKAHDESPKQMPLVKKSKKSQKKTNKEIVEVAPEVRDEAPQLESQVKKPKKTQKKLKK 134


>Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical
           protein C11G6.1 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/76 (22%), Positives = 41/76 (53%)
 Frame = +1

Query: 19  EPKRHDNRPLRVQKIRKIVKSAQIIVKVVSKEAEGDEERSRENRVTRRPLGQKLLKKNPK 198
           +PK    +   ++K +++  S QII +   K  E  EE+ ++ + + +   ++ L +  +
Sbjct: 410 KPKGRPPKKATLEKRKRL--SEQIIAQQQKKLDEFKEEKEKQEKTSDKKPKKQTLAEEIR 467

Query: 199 NRVFTAQSGVRLPISI 246
           +++  A+S + LP S+
Sbjct: 468 DQLLRAKSKIVLPNSV 483


>AF078786-1|AAY43998.1|  102|Caenorhabditis elegans Hypothetical
           protein M01G5.6 protein.
          Length = 102

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
 Frame = +2

Query: 563 PPFFWCW----MWLR-SFPTFPQKYGHFFIRVESATRV 661
           P +FW       WLR   P F  KY HFF+R     RV
Sbjct: 16  PIYFWSANDVDQWLRRKRPRFALKYAHFFLRHNVTGRV 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,790,913
Number of Sequences: 27780
Number of extensions: 355473
Number of successful extensions: 837
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)