Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17h18
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75...    29   3.9  
09_02_0548 - 10467342-10468810,10470309-10471632                       28   5.2  
07_01_0066 - 470595-470724,470877-471040,471552-471593,471730-47...    28   6.9  
01_05_0231 - 19545298-19545372,19545499-19545644,19545839-19546211     28   6.9  

>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
            752025-753905,754093-754296,754807-754899,755036-755122,
            755241-755328,755533-755645,755943-757259,757398-758672,
            759166-759273
          Length = 2233

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -3

Query: 503  HDILLLTTWMKLLVIYKWYVRW*YNICRCALTNFYVCPCKCKIVDFNA----CFIAYLLL 336
            H +LL +T  KLL I + Y++W   + R       +   +  IVDFN     CFI  L +
Sbjct: 1310 HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNRPNSDCFIFLLSI 1369

Query: 335  R 333
            R
Sbjct: 1370 R 1370


>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -2

Query: 165 HGRNKQGGGTYPCELTRRPATSNTD 91
           H RNK  G  YPCEL    A   TD
Sbjct: 896 HERNKYAGVAYPCELPWPRALQATD 920


>07_01_0066 -
           470595-470724,470877-471040,471552-471593,471730-471771,
           472147-472246,472396-472460,473015-473101,473795-473873,
           474490-474558,476290-476474
          Length = 320

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/49 (20%), Positives = 21/49 (42%)
 Frame = -3

Query: 149 RAVVPTRANSQDVLPPVILIDTSKIDFNTCYFFCFVPSPRAAWCAIFAK 3
           +A++   + S+  LP +     S+     C+ +C +      WC  + K
Sbjct: 101 KALISAESESEITLPQLTTCTASRSTHGICFQYCLMSKTLGNWCHEYRK 149


>01_05_0231 - 19545298-19545372,19545499-19545644,19545839-19546211
          Length = 197

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 428 ICRCALTNFYVCPCKCKIVDFNACFIAYLLLRWVDELTAYLVLS 297
           +C+C L     C C  +   +  C + Y LLR+ DEL   L+ S
Sbjct: 103 LCQCGLRRPLWCGCDLQC--WRGCGLQYELLRFNDELRGNLLRS 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,949,170
Number of Sequences: 37544
Number of extensions: 384754
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)