Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17h18
         (622 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83493-1|AAC47652.1|  732|Drosophila melanogaster MCM5 homolog p...    28   8.9  
AY071628-1|AAL49250.1|  733|Drosophila melanogaster RE67590p pro...    28   8.9  
AE014297-1202|AAF54557.1|  733|Drosophila melanogaster CG4082-PA...    28   8.9  

>U83493-1|AAC47652.1|  732|Drosophila melanogaster MCM5 homolog
           protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 422 RCALTNFYVCPCKCKIVDF 366
           +C L  F++ P KCK VDF
Sbjct: 200 KCPLDPFFIMPDKCKCVDF 218


>AY071628-1|AAL49250.1|  733|Drosophila melanogaster RE67590p
           protein.
          Length = 733

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 422 RCALTNFYVCPCKCKIVDF 366
           +C L  F++ P KCK VDF
Sbjct: 201 KCPLDPFFIMPDKCKCVDF 219


>AE014297-1202|AAF54557.1|  733|Drosophila melanogaster CG4082-PA
           protein.
          Length = 733

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 422 RCALTNFYVCPCKCKIVDF 366
           +C L  F++ P KCK VDF
Sbjct: 201 KCPLDPFFIMPDKCKCVDF 219


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,251,393
Number of Sequences: 53049
Number of extensions: 624819
Number of successful extensions: 1206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)