Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17h18
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U40411-3|AAC47066.2|  270|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AL031621-4|CAA20931.1|   75|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical
           protein F40F9.4 protein.
          Length = 343

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 413 LTNFYVCPCKCKIVDFNACFIAYLLLRW--VDELTAYLVLSGYR 288
           +T +Y+CP     +DF + F+A  +  +  VD L ++ V+  YR
Sbjct: 260 ITIYYLCPMLDMDLDFASVFVASTITLYPAVDPLPSFFVIKSYR 303


>U40411-3|AAC47066.2|  270|Caenorhabditis elegans Hypothetical
           protein B0403.3 protein.
          Length = 270

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 380 YIYMDTHKNLSAHIYICYITILHTICILPAASSTWSIKGYHDS 508
           ++  + H N+ A   +C+  I+  +CI  A ++   +K Y+DS
Sbjct: 167 FVEQNKHCNVIACYQLCHEYIISKVCIDSAVAARSVVKSYYDS 209


>AL031621-4|CAA20931.1|   75|Caenorhabditis elegans Hypothetical
           protein F28H6.7 protein.
          Length = 75

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 422 RCALTNFYVCPCKCKIVDFNACFI 351
           R  +  F+  PC C I+DF ACF+
Sbjct: 36  RSEIPYFWCIPC-CLIIDFCACFV 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,280
Number of Sequences: 27780
Number of extensions: 302706
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)