Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17h18
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   7.3  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   7.3  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   7.3  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   7.3  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   7.3  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   7.3  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   7.3  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   7.3  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   7.3  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   7.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   9.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.7  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 593 HTSDHPY*CCRCE 555
           HT + PY C  C+
Sbjct: 32  HTGEKPYHCSHCD 44


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 318 HSLPGVKWLPEPIDIYNVNAPP 253
           +++  ++ +P P+ IY  N PP
Sbjct: 111 YNIINIEQIPVPVPIYCGNFPP 132


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 318 HSLPGVKWLPEPIDIYNVNAPP 253
           +++  ++ +P P+ IY  N PP
Sbjct: 111 YNIINIEQIPVPVPIYCGNFPP 132


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 318 HSLPGVKWLPEPIDIYNVNAPP 253
           +++  ++ +P P+ IY  N PP
Sbjct: 111 YNIINIEQIPVPVPIYCGNFPP 132


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 318 HSLPGVKWLPEPIDIYNVNAPP 253
           +++  ++ +P P+ IY  N PP
Sbjct: 111 YNIINIEQIPVPVPIYCGNFPP 132


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 318 HSLPGVKWLPEPIDIYNVNAPP 253
           +++  ++ +P P+ IY  N PP
Sbjct: 111 YNIINIEQIPVPVPIYCGNFPP 132


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 318 HSLPGVKWLPEPIDIYNVNAPP 253
           +++  ++ +P P+ IY  N PP
Sbjct: 111 YNIINIEQIPVPVPIYCGNFPP 132


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 318 HSLPGVKWLPEPIDIYNVNAPP 253
           +++  ++ +P P+ IY  N PP
Sbjct: 115 YNIINIEQIPVPVPIYCGNFPP 136


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 318 HSLPGVKWLPEPIDIYNVNAPP 253
           +++  ++ +P P+ IY  N PP
Sbjct: 111 YNIINIEQIPVPVPIYCGNFPP 132


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 318 HSLPGVKWLPEPIDIYNVNAPP 253
           +++  ++ +P P+ IY  N PP
Sbjct: 336 YNIINIEQIPVPVPIYCGNFPP 357


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -2

Query: 318 HSLPGVKWLPEPIDIYNVNAPP 253
           +++  ++ +P P+ +Y  N PP
Sbjct: 104 YNINHIEQIPVPVPVYYGNFPP 125


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 614 EARPGERHTSDHPY*CCRCE 555
           EA P    +SD+ +  CRC+
Sbjct: 280 EACPAHSKSSDYGFTECRCD 299


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -2

Query: 318 HSLPGVKWLPEPIDIYNVNAPP 253
           +++  ++ +P P+ +Y  N PP
Sbjct: 338 YNIINIEQIPVPVPVYCGNFPP 359


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 593 HTSDHPY*CCRCE 555
           HT + PY C  CE
Sbjct: 142 HTKERPYKCDVCE 154


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 287 SP*TSTT*MRHPPSHLEI*VLRSHY 213
           SP T    +  PP H ++ + +SH+
Sbjct: 50  SPSTHLMDLSSPPEHRDLPIYQSHH 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,809
Number of Sequences: 438
Number of extensions: 3774
Number of successful extensions: 29
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)