Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17h16
(655 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37976-1|CAA86030.1| 1821|Homo sapiens LTBP-2 precursor protein. 32 1.6
S82451-1|AAB37459.1| 1821|Homo sapiens latent transforming growt... 32 1.6
BC078659-1|AAH78659.1| 1821|Homo sapiens latent transforming gro... 32 1.6
AB209865-1|BAD93102.1| 1700|Homo sapiens latent transforming gro... 32 1.6
AL589653-1|CAI40809.1| 1560|Homo sapiens proprotein convertase s... 31 2.7
AL391868-1|CAI40675.1| 1560|Homo sapiens proprotein convertase s... 31 2.7
AL353607-3|CAI41234.1| 1560|Homo sapiens proprotein convertase s... 31 2.7
L00352-1|AAA56833.1| 860|Homo sapiens low density lipoprotein r... 30 6.3
BT007361-1|AAP36025.1| 860|Homo sapiens low density lipoprotein... 30 6.3
BC014514-1|AAH14514.1| 860|Homo sapiens low density lipoprotein... 30 6.3
AY324609-1|AAP72971.1| 860|Homo sapiens low density lipoprotein... 30 6.3
AY114155-1|AAM56036.1| 860|Homo sapiens low density lipoprotein... 30 6.3
AF217403-1|AAF24515.1| 837|Homo sapiens low density lipoprotein... 30 6.3
AB209409-1|BAD92646.1| 870|Homo sapiens low density lipoprotein... 30 6.3
>Z37976-1|CAA86030.1| 1821|Homo sapiens LTBP-2 precursor protein.
Length = 1821
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 197 TKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISD 84
T C + C + LC +GFE P+ DCV +++
Sbjct: 1311 TMCGSHGFCDNTDGSFRCLCDQGFEISPSGWDCVDVNE 1348
>S82451-1|AAB37459.1| 1821|Homo sapiens latent transforming growth
factor-beta-binding protein-2 protein.
Length = 1821
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 197 TKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISD 84
T C + C + LC +GFE P+ DCV +++
Sbjct: 1311 TMCGSHGFCDNTDGSFRCLCDQGFEISPSGWDCVDVNE 1348
>BC078659-1|AAH78659.1| 1821|Homo sapiens latent transforming growth
factor beta binding protein 2 protein.
Length = 1821
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 197 TKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISD 84
T C + C + LC +GFE P+ DCV +++
Sbjct: 1311 TMCGSHGFCDNTDGSFRCLCDQGFEISPSGWDCVDVNE 1348
>AB209865-1|BAD93102.1| 1700|Homo sapiens latent transforming growth
factor beta binding protein 2 variant protein.
Length = 1700
Score = 32.3 bits (70), Expect = 1.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 197 TKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISD 84
T C + C + LC +GFE P+ DCV +++
Sbjct: 1190 TMCGSHGFCDNTDGSFRCLCDQGFEISPSGWDCVDVNE 1227
>AL589653-1|CAI40809.1| 1560|Homo sapiens proprotein convertase
subtilisin/kexin type 5 protein.
Length = 1560
Score = 31.5 bits (68), Expect = 2.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 197 TKCNAFYMCVGINHRLELL-CSEGFEFDPNVKDCVPISDYGC 75
T+C Y NH + L C +G DP+ ++CVP + GC
Sbjct: 675 TRCMKGYFIAPTNHTCQKLECGQGEVQDPDYEECVPCEE-GC 715
>AL391868-1|CAI40675.1| 1560|Homo sapiens proprotein convertase
subtilisin/kexin type 5 protein.
Length = 1560
Score = 31.5 bits (68), Expect = 2.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 197 TKCNAFYMCVGINHRLELL-CSEGFEFDPNVKDCVPISDYGC 75
T+C Y NH + L C +G DP+ ++CVP + GC
Sbjct: 675 TRCMKGYFIAPTNHTCQKLECGQGEVQDPDYEECVPCEE-GC 715
>AL353607-3|CAI41234.1| 1560|Homo sapiens proprotein convertase
subtilisin/kexin type 5 protein.
Length = 1560
Score = 31.5 bits (68), Expect = 2.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 197 TKCNAFYMCVGINHRLELL-CSEGFEFDPNVKDCVPISDYGC 75
T+C Y NH + L C +G DP+ ++CVP + GC
Sbjct: 675 TRCMKGYFIAPTNHTCQKLECGQGEVQDPDYEECVPCEE-GC 715
>L00352-1|AAA56833.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 200 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 99
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 361 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 392
>BT007361-1|AAP36025.1| 860|Homo sapiens low density lipoprotein
receptor (familial hypercholesterolemia) protein.
Length = 860
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 200 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 99
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 361 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 392
>BC014514-1|AAH14514.1| 860|Homo sapiens low density lipoprotein
receptor (familial hypercholesterolemia) protein.
Length = 860
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 200 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 99
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 361 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 392
>AY324609-1|AAP72971.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 200 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 99
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 361 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 392
>AY114155-1|AAM56036.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 200 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 99
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 361 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 392
>AF217403-1|AAF24515.1| 837|Homo sapiens low density lipoprotein
receptor protein.
Length = 837
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 200 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 99
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 338 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 369
>AB209409-1|BAD92646.1| 870|Homo sapiens low density lipoprotein
receptor precursor variant protein.
Length = 870
Score = 30.3 bits (65), Expect = 6.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 200 PTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDC 99
P C+ +CV + + C EGF+ DP+ K C
Sbjct: 373 PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKAC 404
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,359,556
Number of Sequences: 237096
Number of extensions: 1227449
Number of successful extensions: 2506
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2506
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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