Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17h09
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 30 0.26
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 27 1.8
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 27 3.2
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 26 4.2
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 26 4.2
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 5.5
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.3
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 25 7.3
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 9.7
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 25 9.7
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 30.3 bits (65), Expect = 0.26
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 419 SAHYLFYSLIFMNVVPNLLIL-VPIFLFALLHAASYSLTILDTLGQNSLWVARL 577
SA +Y I ++VPN+ L P ++A A + LT +LG + LW++R+
Sbjct: 2014 SASLFWY--ILHSLVPNIYALSTPFIIYATAFALA-GLTTFSSLGDSRLWISRV 2064
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 143 QQAGDTGPPKGIPALKAHIIANKID 217
Q+ G GP KG A+K H I +ID
Sbjct: 330 QRLGADGPEKGYDAIKKHRIYRRID 354
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -3
Query: 169 WWTSVACLLILIGHIDSRY*SSCLDN*NYIKYYEIIDKIATQNVVRQLGTNER*IN 2
W TS L G+ R SC+ KYY +D +A + + L NER +N
Sbjct: 109 WETSFHQYLAEYGYPCIRDEKSCVTISPIPKYYGKVDPVAQYSYTKGLPENEREVN 164
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +2
Query: 449 FMNVVPNLLILVPIFLFALLHAASYSLTIL 538
F+ V+PN+ +L+P F+ + + Y L +
Sbjct: 103 FLTVIPNIAVLIPCFIAYKITDSHYLLVAI 132
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 377 SLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLL 475
S S++ +A FF+ D YLFY+L F+ VP ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 217 RSSLGGPRNHRAVYHWIR 270
R LG R HRA HWI+
Sbjct: 363 RDLLGDERVHRAAMHWIK 380
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 328 GDFSAAATSKNSSTRDLPLAGFHGEVLPGGQRALSILFTHFHERRAQFVNIGANLFICAA 507
G FS+ A+ + DL L F LP R++++L +HF + + +I AN+ I
Sbjct: 29 GSFSSVASVSLKRSGDLLL--FERFTLPARTRSVALLSSHFLQSESGRHSI-ANILIATE 85
Query: 508 T-RCFV 522
+C++
Sbjct: 86 NGKCYL 91
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +2
Query: 428 YLFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEFQSR 607
Y+F ++F NL +L TI+ LG++ + RLLIS + +
Sbjct: 398 YIFLKMVFWTARVNLYQCFITLDSGILEDEE---TIIGNLGESCIQCVRLLISQITILEK 454
Query: 608 NILRAAALAEIV 643
AL EI+
Sbjct: 455 RGWLLVALLEII 466
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 43 SVSRFYLLFHSILYNFSCPSTNFNTLNQYG 132
S++ F+L F+ F C +T++++LN YG
Sbjct: 611 SMANFFLAFY-----FVCNATSYSSLNPYG 635
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 328 GDFSAAATSKNSSTRDLPLAGFH 396
G FS+ A KNSS+ +P + FH
Sbjct: 208 GPFSSIAPYKNSSSSVIPDSSFH 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,076
Number of Sequences: 5004
Number of extensions: 55027
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -