Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17h09
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0313 + 3447065-3448204                                           29   3.3  
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996...    29   4.3  
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495...    29   4.3  
03_03_0071 + 14257840-14257953,14259031-14259167,14259196-142592...    28   5.7  

>10_01_0313 + 3447065-3448204
          Length = 379

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 260 IGYVFPLFNNPVSAFYKALLANAATSALRLHQRIPAREISL 382
           +G+ FP   +PV +F     +  A   L  H+ +P REI L
Sbjct: 80  LGFFFPYDFDPVFSFNAGFRSTTAQHHLPAHRFLPEREIGL 120


>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
            25999880-25999989,26000155-26000311,26000390-26000915,
            26001101-26001265,26002470-26002589,26003022-26003093,
            26003422-26003499,26003965-26004057,26004491-26004647,
            26005351-26005589,26006907-26007050,26007637-26007666,
            26010610-26010993,26011486-26011554,26012353-26012418,
            26013166-26013255,26013583-26013628,26014318-26014419,
            26014552-26014694
          Length = 1195

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 336  EVAAFASNAL*NADTGLLNNGNTYPMVHSTVITRTPQRATSILL 205
            E  A + N +   DT  +N+GNT P  + T+ + TP + T  L+
Sbjct: 961  EDIARSVNVVHVVDTTTVNSGNTEPSSYVTLFSNTPGKLTKELV 1004


>03_02_0014 +
           4955759-4956106,4956229-4956277,4956372-4956579,
           4956700-4956874,4956981-4957046,4957150-4957263,
           4957366-4957482,4957589-4957715,4957826-4958112,
           4958209-4958399,4958937-4959022,4959117-4959193,
           4959330-4959473
          Length = 662

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 27/102 (26%), Positives = 44/102 (43%)
 Frame = +2

Query: 233 VRVITVLCTIGYVFPLFNNPVSAFYKALLANAATSALRLHQRIPAREISLSRDFMARFFL 412
           V  I VL T+  + PLF    +A   +++ +A    +  H      ++    DF+A    
Sbjct: 423 VMSIVVLLTLELITPLFKYTPNAILSSIIISAVLGLVDYHTAYLIWKVD-KLDFLACLGA 481

Query: 413 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTIL 538
                  F+ +IF +V   LLI V I L  +L   +   T+L
Sbjct: 482 -------FFGVIFSSVEYGLLIAVAISLAKILLQVTRPRTVL 516


>03_03_0071 +
           14257840-14257953,14259031-14259167,14259196-14259246,
           14260396-14260499,14260887-14261020
          Length = 179

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 413 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHA 514
           ED   +L + LIFM  +  +LIL  +F+  + HA
Sbjct: 71  EDHGQFLSHVLIFMEPMNVILILKTLFVITISHA 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,334,402
Number of Sequences: 37544
Number of extensions: 397276
Number of successful extensions: 1207
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)