Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17h09
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical...   105   3e-23
Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical p...    33   0.14 
Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical p...    30   1.3  
AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine re...    29   2.2  
Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    29   2.9  
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF039050-1|AAC47934.2|  344|Caenorhabditis elegans Seven tm rece...    29   3.9  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   3.9  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   3.9  
Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF016442-4|AAB65915.1|  361|Caenorhabditis elegans Serpentine re...    27   8.9  
AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AL032626-27|CAA21541.1|  271|Caenorhabditis elegans Hypothetical
           protein Y37D8A.17 protein.
          Length = 271

 Score =  105 bits (252), Expect = 3e-23
 Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 2/167 (1%)
 Frame = +2

Query: 164 PPKGIPALKAHIIANKIDVALWGVRVITVLCTIGYVFPLFNN-PV-SAFYKALLANAATS 337
           PP    ++  ++ AN ++  L+  RV+TV   + Y+ P     P  SA+YK   A+AAT 
Sbjct: 31  PPPAYSSISQYVSANTMECVLFAARVLTVFFALNYMIPFIGLVPAHSAYYKIFAASAATF 90

Query: 338 ALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAA 517
           ALRLH RI   + +L+  F+ R  +EDS HYL YS++F+   P  +  +P+ ++A LHA 
Sbjct: 91  ALRLHTRIQG-QFALNAQFIQRLIIEDSFHYLVYSVVFLMAAPVSMAALPVTIYAALHAC 149

Query: 518 SYSLTILDTLGQNSLWVARLLISLVEFQSRNILRAAALAEIVLFPVV 658
           ++   IL   G  S  + + L      Q++N L   A +EI L P++
Sbjct: 150 TFMTKILRETGHTSSIIPK-LEQFTAHQTQNALGIIACSEIFLVPLL 195


>Z74042-14|CAE11313.1|  311|Caenorhabditis elegans Hypothetical
           protein T11F9.18 protein.
          Length = 311

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +2

Query: 284 NNPVSAFYKALLANAATSAL-RLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNV 460
           + P++A Y  L   A+   L +L   +  R ISL R+F+   +++ + H +F S+     
Sbjct: 201 SQPLAAVYFGLSVYASKLGLQKLKASLSQRTISLQRNFLHSLYIQTAVHVIFISIPLGIF 260

Query: 461 VPNLLILVPIFLFALLHAASYSLTILDTL 547
             + +I +P  +  +L A       L TL
Sbjct: 261 FLSFIIWIPSNMSYILTAMCTQHGSLSTL 289


>Z71185-12|CAA94906.3|  460|Caenorhabditis elegans Hypothetical
           protein C35A5.3 protein.
          Length = 460

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 469 FVNIGANLFICAATRCFVFLDYP*YSWSE 555
           FV++G ++FI  A   F+F D P  SW+E
Sbjct: 417 FVSLGVSMFIANAISVFIFTDQP-ASWTE 444


>AC024799-6|AAK72315.1|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein5 protein.
          Length = 306

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +2

Query: 437 YSLIFMNVVPNLLILVPIFLFALL--HAASYSLTILDTLGQ-NSLWVARLLISLVEFQSR 607
           + L F+++  NLLI +P+F FA     ++ Y +   + +     L+VA    SL     R
Sbjct: 12  FCLSFVSICLNLLIFIPVFRFAFFGKRSSIYLIAFFNIISDLQQLFVACFHSSLSIIFGR 71

Query: 608 NILRAAALAEIVLF 649
            +L  A +    +F
Sbjct: 72  YVLSGARINSFSVF 85


>Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical
           protein C55A1.3 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 431 LFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEF 598
           LFY+L+F  ++P +L+ +P  L  L      S+     L   S+++  +L  L  F
Sbjct: 260 LFYALVFQTLIPVILMHIPASLGFLFSMFGQSILFFGELPTFSVFLYPILDPLPNF 315


>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 121 NQYGRSKSASRRHWSTKRHPSLESSHHCQ*NRRSSLGGPR 240
           + YGR  ++SRR +  ++ PS  S+ H   N R+SL  P+
Sbjct: 161 DNYGREPASSRRPYPPQQPPS-TSAPHSSPNNRTSLYNPQ 199


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +2

Query: 437 YSLIFMNVVPNLLILVPIFLFALLHAAS--YSLTILDTLGQ-NSLWVARLLISLVEFQSR 607
           + L F+++  NLLI +P+F FA     S  Y +   + +     L+VA    SL     R
Sbjct: 12  FCLSFVSICLNLLIFIPVFRFAFFGKKSSIYLIAFFNIISDLLQLFVACFHSSLSIIFGR 71

Query: 608 NILRAAALAEIVLF 649
            +L  A +  + +F
Sbjct: 72  YVLTGARINNLSVF 85


>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
           protein B0240.3 protein.
          Length = 1093

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 331 DFSAAATSKNSSTRDLPLAGFHGEV 405
           +F   +TS     +D+PL GFHGE+
Sbjct: 317 NFVLNSTSSFEPLKDVPLCGFHGEI 341


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
           protein K08C7.3b protein.
          Length = 3672

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 100 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 204
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
           protein K08C7.3a protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 100 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 204
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
           protein K01A6.2 protein.
          Length = 1092

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 650 GTARSRRAPRPGGCSATGTRPGR*ADEPPTTNSDQEY 540
           GT +S  +PR  G  ++ TR  +  D P T  S  +Y
Sbjct: 398 GTLKSSSSPRDSGFDSSPTRYRKFGDPPETATSSADY 434


>AF039050-1|AAC47934.2|  344|Caenorhabditis elegans Seven tm
           receptor protein 247 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +2

Query: 431 LFYSLIFMNVVPNLLILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEF 598
           LFY+L+F  ++P +L+ +P     L+     S+ +   L   S+++  +L  L  F
Sbjct: 245 LFYALVFQTLIPVILMHIPASFGFLVSIFGNSIQLFGQLPTFSIFLFPMLDPLPNF 300


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 100 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 204
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
           protein.
          Length = 3704

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 100 STNFNTLNQYGRSKSASRRHWSTKRHPSLESSHHC 204
           ST +  LN Y       ++ WS   +P +   H C
Sbjct: 67  STQYTPLNSYSYQDDEQQKSWSQYENPMVRGGHGC 101


>Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical
           protein C47E12.1 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 261 LDTCSRCLTIQCRHSTKRYSQTRRL 335
           L +CS CL  Q R    RY QT++L
Sbjct: 392 LVSCSNCLDYQSRRLKVRYGQTKKL 416


>AL021503-2|CAA16421.1|  320|Caenorhabditis elegans Hypothetical
           protein Y68A4A.3 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 431 LFYSLIFMNVVPNLLILVP 487
           LFYSLIF + +P LL+ +P
Sbjct: 239 LFYSLIFQSAIPCLLMYLP 257


>Z70753-3|CAA94768.1|  343|Caenorhabditis elegans Hypothetical
           protein F40F9.4 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 431 LFYSLIFMNVVPNLLILVPIFLFAL 505
           LFYSL+   ++P +L+ +PI ++ L
Sbjct: 241 LFYSLVLQTLIPFVLMHIPITIYYL 265


>Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical
           protein R07E3.4 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 252 CVPLDTCSRCLTIQCRHSTKRYSQTRRLQRCGYIKE 359
           C PLDT  R + +Q     K+Y+ T+   +  Y K+
Sbjct: 230 CYPLDTVRRSMMMQSGKQIKQYTSTKDCWKTLYKKD 265


>AF016442-4|AAB65915.1|  361|Caenorhabditis elegans Serpentine
           receptor, class n protein1 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 416 DSAHYLFYSLIFMNVVPNLLILVPIFLFALLHAASY 523
           ++  +L    +F N++P ++I  P+FL A     SY
Sbjct: 247 ETHRHLTLLALFQNLIPAVVIAFPVFLVAFSFVMSY 282


>AC006834-8|AAF40006.1|  865|Caenorhabditis elegans Hypothetical
           protein ZK973.2 protein.
          Length = 865

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 638 SRRAPRPGGCSATGTRPGR*ADEPPTTN 555
           S ++PRPGG S +  R G  A++P + N
Sbjct: 832 SSKSPRPGGPSTSSHRHGSHANDPRSHN 859


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,942,765
Number of Sequences: 27780
Number of extensions: 316660
Number of successful extensions: 1168
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)