Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17h05
(640 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for ... 126 7e-29
CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein. 126 7e-29
BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein. 126 7e-29
AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant pr... 124 3e-28
BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I... 120 4e-27
X95486-1|CAA64752.1| 1640|Homo sapiens clathrin heavy chain poly... 30 6.0
U60803-1|AAB40909.1| 1569|Homo sapiens clathrin heavy chain 2 pr... 30 6.0
U60802-1|AAB40908.1| 1626|Homo sapiens clathrin heavy chain 2 pr... 30 6.0
U41763-1|AAC50494.1| 1640|Homo sapiens muscle clathrin heavy cha... 30 6.0
BC019895-1|AAH19895.1| 373|Homo sapiens FBLIM1 protein protein. 30 8.0
AY180161-1|AAO49012.1| 373|Homo sapiens migfilin protein. 30 8.0
AL450998-6|CAH70854.1| 373|Homo sapiens filamin binding LIM pro... 30 8.0
AL450998-5|CAH70853.1| 276|Homo sapiens filamin binding LIM pro... 30 8.0
AL133035-1|CAB61365.1| 200|Homo sapiens hypothetical protein pr... 30 8.0
AK027444-1|BAB55115.1| 276|Homo sapiens protein ( Homo sapiens ... 30 8.0
AF459643-1|AAO15549.1| 374|Homo sapiens filamin-binding LIM pro... 30 8.0
>Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for
ribophorin I. ).
Length = 607
Score = 126 bits (304), Expect = 7e-29
Identities = 71/174 (40%), Positives = 105/174 (60%), Gaps = 7/174 (4%)
Frame = +2
Query: 134 KNVDRTVDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DS 292
++V RTVD+S+ L KV +++VL + G S FL A+E + LA +G + D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 293 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 472
+L + ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 473 FVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANV 634
FV + GN Y YSPY T TQ V L ++ VES+TK+ ++ + + YGP+ +V
Sbjct: 153 FVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDV 206
>CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein.
Length = 607
Score = 126 bits (304), Expect = 7e-29
Identities = 71/174 (40%), Positives = 105/174 (60%), Gaps = 7/174 (4%)
Frame = +2
Query: 134 KNVDRTVDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DS 292
++V RTVD+S+ L KV +++VL + G S FL A+E + LA +G + D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 293 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 472
+L + ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 473 FVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANV 634
FV + GN Y YSPY T TQ V L ++ VES+TK+ ++ + + YGP+ +V
Sbjct: 153 FVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDV 206
>BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein.
Length = 607
Score = 126 bits (304), Expect = 7e-29
Identities = 71/174 (40%), Positives = 105/174 (60%), Gaps = 7/174 (4%)
Frame = +2
Query: 134 KNVDRTVDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DS 292
++V RTVD+S+ L KV +++VL + G S FL A+E + LA +G + D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 293 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 472
+L + ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 473 FVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANV 634
FV + GN Y YSPY T TQ V L ++ VES+TK+ ++ + + YGP+ +V
Sbjct: 153 FVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDV 206
>AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant
protein.
Length = 607
Score = 124 bits (299), Expect = 3e-28
Identities = 70/174 (40%), Positives = 104/174 (59%), Gaps = 7/174 (4%)
Frame = +2
Query: 134 KNVDRTVDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DS 292
++V RTVD+S+ L KV +++VL + G S FL A+E + LA +G + D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 293 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 472
+L + ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 473 FVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANV 634
FV + GN Y Y PY T TQ V L ++ VES+TK+ ++ + + YGP+ +V
Sbjct: 153 FVVFEGNHYFYPPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDV 206
>BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I
protein.
Length = 568
Score = 120 bits (289), Expect = 4e-27
Identities = 68/168 (40%), Positives = 100/168 (59%), Gaps = 7/168 (4%)
Frame = +2
Query: 152 VDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DSNSKDLR 310
VD+S+ L KV +++VL + G S FL A+E + LA +G + D +L
Sbjct: 1 VDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLE 60
Query: 311 LAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVG 490
+ ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E QFV + G
Sbjct: 61 VRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEG 119
Query: 491 NLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANV 634
N Y YSPY T TQ V L ++ VES+TK+ ++ + + YGP+ +V
Sbjct: 120 NHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDV 167
>X95486-1|CAA64752.1| 1640|Homo sapiens clathrin heavy chain
polypeptide protein.
Length = 1640
Score = 30.3 bits (65), Expect = 6.0
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +2
Query: 149 TVDISTQLVKVVSKIVLENSGKSSVKH-----FLFAVEEAAKNNLAFIGAKDSNSKDLRL 313
T D+ +L++++ KIVL+NS S ++ L A++ + +I D N L +
Sbjct: 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLD-NYDALDI 1055
Query: 314 AETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 418
A V Y + + V K +NA A + V++E +
Sbjct: 1056 ASIAVSSALYEEAFTVFHKFDMNASA-IQVLIEHI 1089
>U60803-1|AAB40909.1| 1569|Homo sapiens clathrin heavy chain 2
protein.
Length = 1569
Score = 30.3 bits (65), Expect = 6.0
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +2
Query: 149 TVDISTQLVKVVSKIVLENSGKSSVKH-----FLFAVEEAAKNNLAFIGAKDSNSKDLRL 313
T D+ +L++++ KIVL+NS S ++ L A++ + +I D N L +
Sbjct: 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLD-NYDALDI 1055
Query: 314 AETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 418
A V Y + + V K +NA A + V++E +
Sbjct: 1056 ASIAVSSALYEEAFTVFHKFDMNASA-IQVLIEHI 1089
>U60802-1|AAB40908.1| 1626|Homo sapiens clathrin heavy chain 2
protein.
Length = 1626
Score = 30.3 bits (65), Expect = 6.0
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +2
Query: 149 TVDISTQLVKVVSKIVLENSGKSSVKH-----FLFAVEEAAKNNLAFIGAKDSNSKDLRL 313
T D+ +L++++ KIVL+NS S ++ L A++ + +I D N L +
Sbjct: 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLD-NYDALDI 1055
Query: 314 AETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 418
A V Y + + V K +NA A + V++E +
Sbjct: 1056 ASIAVSSALYEEAFTVFHKFDMNASA-IQVLIEHI 1089
>U41763-1|AAC50494.1| 1640|Homo sapiens muscle clathrin heavy chain
protein.
Length = 1640
Score = 30.3 bits (65), Expect = 6.0
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +2
Query: 149 TVDISTQLVKVVSKIVLENSGKSSVKH-----FLFAVEEAAKNNLAFIGAKDSNSKDLRL 313
T D+ +L++++ KIVL+NS S ++ L A++ + +I D N L +
Sbjct: 997 TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLD-NYDALDI 1055
Query: 314 AETTVKGYDYVKFWRVELKEPLNAGATVNVVVETV 418
A V Y + + V K +NA A + V++E +
Sbjct: 1056 ASIAVSSALYEEAFTVFHKFDMNASA-IQVLIEHI 1089
>BC019895-1|AAH19895.1| 373|Homo sapiens FBLIM1 protein protein.
Length = 373
Score = 29.9 bits (64), Expect = 8.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 379 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 492
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
>AY180161-1|AAO49012.1| 373|Homo sapiens migfilin protein.
Length = 373
Score = 29.9 bits (64), Expect = 8.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 379 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 492
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
>AL450998-6|CAH70854.1| 373|Homo sapiens filamin binding LIM
protein 1 protein.
Length = 373
Score = 29.9 bits (64), Expect = 8.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 379 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 492
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
>AL450998-5|CAH70853.1| 276|Homo sapiens filamin binding LIM
protein 1 protein.
Length = 276
Score = 29.9 bits (64), Expect = 8.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 379 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 492
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 104 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 140
>AL133035-1|CAB61365.1| 200|Homo sapiens hypothetical protein
protein.
Length = 200
Score = 29.9 bits (64), Expect = 8.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 379 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 492
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 28 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 64
>AK027444-1|BAB55115.1| 276|Homo sapiens protein ( Homo sapiens
cDNA FLJ14538 fis, clone NT2RM2001324, weakly similar to
ZYXIN. ).
Length = 276
Score = 29.9 bits (64), Expect = 8.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 379 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 492
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 104 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 140
>AF459643-1|AAO15549.1| 374|Homo sapiens filamin-binding LIM
protein-1 protein.
Length = 374
Score = 29.9 bits (64), Expect = 8.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 379 KRRCHSKC-CCRNCVHQSFTTISDSYNSARRPVCEICWQ 492
KR+ H++C CR C Q Y RP+CE C+Q
Sbjct: 201 KRQYHAQCFTCRTCRRQ--LAGQSFYQKDGRPLCEPCYQ 237
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,167,382
Number of Sequences: 237096
Number of extensions: 1854352
Number of successful extensions: 3913
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3880
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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