Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17h01
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p...    42   2e-05
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    32   0.030
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    28   0.48 
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    27   0.64 
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    27   0.85 
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   1.5  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   2.6  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    25   2.6  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    24   6.0  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    24   6.0  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    24   7.9  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    24   7.9  

>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 71

 Score = 42.3 bits (95), Expect = 2e-05
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
 Frame = +3

Query: 162 ENWGTEDA--DDEDVSVWEDNWED-DVIQDDFNQQLRQQLEK 278
           ENW  +D   D  D ++WE+NW+D D+  DDF+ QL+ +L+K
Sbjct: 24  ENWPMKDTELDTGDDTLWENNWDDEDIGDDDFSVQLQAELKK 65


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 31.9 bits (69), Expect = 0.030
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 156 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQ-LRQQLEKL 281
           P EN   +  D +DVS+  DN   DV QD FN++ ++Q++  L
Sbjct: 378 PQEN-SAQIYDGKDVSMVNDNMHSDVRQDSFNKESIKQRIPSL 419


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 168 WGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 293
           W  ++   +D SVW   + +D +     + +  +LEKL D++
Sbjct: 537 WKIKNGSIDDFSVWRSAFANDALDRLLEKVILPKLEKLMDEE 578


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 174 TEDADDEDVSV-WEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 296
           TE+A DED SV  E++ E++  +D+   + +Q+    K +KS
Sbjct: 202 TEEASDEDESVDLEEDEEEEDEEDEEGDEEKQEPPSKKSKKS 243


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 192 EDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQ 290
           + +S+W +    D + D F Q+++ + E LKD+
Sbjct: 162 DKLSIWTETDMSDRVTDAFKQKMQFEAELLKDE 194


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 231 RRLPSCLPKPIHLHHQRLLYPNFPR 157
           R+    L + IH HH+RLL+PN  R
Sbjct: 64  RKQAIILAREIH-HHRRLLHPNITR 87


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 174 TEDADDEDVSVWEDNWEDD-VIQDDF 248
           T +A  E++  W+DN ED+  ++ DF
Sbjct: 35  TNEAQREEIITWKDNREDEGEVKTDF 60


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +3

Query: 168 WGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKD 287
           +G +D D+ED S  +D ++  + + +  +  R++LEK+ +
Sbjct: 122 YGGDDYDNEDYSEEDDEFDARMEEQEALRLQRKRLEKVSE 161


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/44 (20%), Positives = 26/44 (59%)
 Frame = +3

Query: 162 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 293
           +++  E++DD+ +   +   EDDV  ++  + + +Q  + K+++
Sbjct: 723 DDFENEESDDDKIFEQQTKIEDDVKNENKTEPVEEQKSEEKNEQ 766


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 162 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 284
           E    E +DDE +S  ++  ED+ I ++ N + R+  +K +
Sbjct: 279 EEEAEETSDDEPLSSEDEENEDEDITEESNLRKRKVSDKTR 319


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 207 WEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 296
           W+++W++ V QD   Q   + L+  K+ K+
Sbjct: 43  WKNSWDEWVEQDRILQWTEENLKTQKELKN 72


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/40 (30%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +3

Query: 177 EDADDEDVSVWEDNWEDDVIQDDFNQQL-RQQLEKLKDQK 293
           E+A +ED    + N+E+D+I D+ + Q+  ++LE+ ++++
Sbjct: 54  EEALEED----DTNYEEDIIDDEESAQVDEEELEEEEEEE 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,129,828
Number of Sequences: 5004
Number of extensions: 19408
Number of successful extensions: 74
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)