Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17g22
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    67   3e-12
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    37   0.004
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    31   0.13 
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    31   0.23 
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    30   0.31 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.41 
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    27   2.9  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.9  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    27   3.8  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    26   5.0  
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...    26   6.7  
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...    26   6.7  

>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = +3

Query: 327 CAGCLGSRSDDFNEIVECDGCGVTVHEGCYGXXXXXXXXXXXXXXXXEPWFCEACKAGVT 506
           C  C  +  ++ N IV CD C  +VH+ CYG                  WFC+ C     
Sbjct: 197 CVICNEAECENSNAIVFCDNCNTSVHQNCYGIPFVPEGQ----------WFCKKCLLAPH 246

Query: 507 DPNC-ELCPNKGGIFKETEVGAWVHLVCALYVPGVAFSEVERL 632
           +  C   CP++ G F  T  G W H +CA+ +P ++F +  RL
Sbjct: 247 EVICCAFCPDRDGAFCTTLDGRWCHTICAIAIPEISFHDTSRL 289


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
 Frame = +3

Query: 474  WFCEACKAGVT-----DPNCELCPNKGG--IFKETEVGAWVHLVCALYVPGV 608
            W C +C++        D +C LC       + K+T  G WVHL+CA + P V
Sbjct: 888  WACLSCRSNDNLGQNNDNHCVLCLQSASHSLMKKTVEGNWVHLICASWTPDV 939


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +3

Query: 327 CAGCLGSRSDDFNEIVECDGCGVTVHEGCYGXXXXXXXXXXXXXXXXEPWFCEAC 491
           C+ C   +S   N IV CDGC    H+ C+                   WFC+ C
Sbjct: 235 CSVCQRLQSPPKNRIVFCDGCNTPFHQLCH----EPYISDELLDSPNGEWFCDDC 285


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = +3

Query: 324 ICAGCLGSRSDDFNEIVECDGCGVTVHEGCYGXXXXXXXXXXXXXXXXEPWFCEACK 494
           +C+ C    S   N IV CDGC    H+ C+                   WFC  C+
Sbjct: 192 LCSVCQRGHSPLSNRIVFCDGCNSPYHQLCH----HPPIDDATVQDVDAEWFCMKCQ 244


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 369 IVECDGCGVTVHEGCYGXXXXXXXXXXXXXXXXEPWFCEACKAGVTD 509
           I+ CDGC    H  C                  E W+C+ACK  ++D
Sbjct: 283 ILLCDGCEAAYHTSCLDPPLTSIPK--------EDWYCDACKFNISD 321


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 643 VTPDKRSTSENATPGT*SAQTKCTQAPTSVSLKIPPLLGHNSQLGSVTPAL 491
           +T    STS  +T G+ S+    T    + S  IPP  G +S    +TP +
Sbjct: 88  ITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTV 138


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 228 SNKIGEEASAIDVLEKAKKHEFKFPGELANLLICAGCLGSRSDDFNEIVECDGCGVTVHE 407
           SN + +  S  D ++KA+K +         LL C  C G  ++D +E+ +C+ C   VH 
Sbjct: 312 SNWLKKNISGSDKVDKAEKKKA--------LLNCE-C-GDSTED-SEMFQCERCDGWVHC 360

Query: 408 GCYG 419
            CYG
Sbjct: 361 ACYG 364


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 19/77 (24%), Positives = 32/77 (41%)
 Frame = -2

Query: 676 LPNENKPFSKRVTPDKRSTSENATPGT*SAQTKCTQAPTSVSLKIPPLLGHNSQLGSVTP 497
           LP   +P     +P    T  +A PG  S  +      +S   ++ P+ G ++   + TP
Sbjct: 229 LPGAQEPNRGYFSP--MHTYSSAVPGPISVPSAPYGRASSTIAEVSPMYGSHAAPYASTP 286

Query: 496 ALQASQNHGSVDAELTV 446
           +     + GS  A  TV
Sbjct: 287 SAAVGSSRGSTPASATV 303


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 715 VPESHLHIVRKNVLPNENKPFSKRVTPDKRSTSENATPG 599
           +P   +H + K  L  ENKP S     +K ++ +NA+ G
Sbjct: 95  LPSLAIHEITKAQLDGENKPISVASYQNKFTSEDNASFG 133


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +3

Query: 336 CLGSRSDDFNEI-VECDGCGVTVHEGCYG 419
           C+    +D  +  V+CDGC    H  C G
Sbjct: 23  CVCKSQEDIGDTWVQCDGCDCWQHASCVG 51


>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +3

Query: 243 EEASAIDVLEKAKKHEFKFPGELANLLICAGCLGSRSDDFNEIVECDGCGVTVHEGCY 416
           +++S    +E  ++ ++KFPG+    +I +   G      +E +E    G  + +GCY
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQ--QRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCY 196


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +3

Query: 243 EEASAIDVLEKAKKHEFKFPGELANLLICAGCLGSRSDDFNEIVECDGCGVTVHEGCY 416
           +++S    +E  ++ ++KFPG+    +I +   G      +E +E    G  + +GCY
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQ--QRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCY 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,300
Number of Sequences: 5004
Number of extensions: 47470
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)