Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17g17
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    29   0.51 
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    29   0.90 
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S...    26   6.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   8.4  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.4  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 430 IYFRRVYCAHCSRTAGCAHCSRAAGCARSSTSGAHCSGTAGCARSSTSGAHTG 588
           +++R   C+  S +A C  C RA       TS    +G+ GC     + A  G
Sbjct: 105 VFYRCKTCSVDSNSALCVKCFRATSHKDHETSFTVSAGSGGCCDCGNAAAWIG 157


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 460 CSRTAGCAHCSRAAGCARSSTSGAHCSGTAGCA 558
           C    GC  C  + GC  S+     CS +  CA
Sbjct: 17  CQSKCGCQDCKESCGCKSSAVDNCKCS-SCKCA 48


>SPAC105.02c |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 170

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 384 RLCALLLEHGADSLLTSRRRQRPASVNKSDRRRLHCQSLDSTCNA 250
           R+  +L+E GAD LLT+    RP  +   D   +   +L+    A
Sbjct: 102 RMVEMLMEVGADPLLTNNDGFRPIDLVPGDFHDVFASALEGPAPA 146


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 205 QCWSADGLRDEQDYWSIAGAI*TLTMETP 291
           QC S DG+ DE+D+     A+  + +  P
Sbjct: 264 QCLSVDGISDEKDFQGTMNAMKVIGITEP 292


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 516 IYFWRALLGYRWLRAL 563
           I+FW A+L +RW  AL
Sbjct: 3   IWFWLAILVFRWWNAL 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,470
Number of Sequences: 5004
Number of extensions: 41942
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)