Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17g17
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221... 33 0.23
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 31 0.94
10_08_0631 - 19435796-19436452,19437237-19438130 31 1.2
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619... 30 2.2
10_08_0742 + 20244984-20247008 29 2.9
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 29 2.9
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 29 3.8
02_05_0977 - 33239887-33240566,33241010-33241985 29 3.8
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 29 3.8
03_04_0112 - 17375871-17376099,17377021-17377054,17377237-173774... 29 5.0
03_03_0217 + 15500943-15502196 29 5.0
03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477 29 5.0
02_04_0538 + 23739830-23740126,23740205-23740261,23740344-237404... 29 5.0
02_01_0406 - 2958933-2962076 29 5.0
03_05_0906 + 28671977-28672111,28672197-28672253,28672678-286728... 28 6.6
03_05_1070 + 30125131-30127029 28 8.7
01_05_0656 + 24011784-24011844,24012737-24012862,24014761-24016052 28 8.7
>11_01_0295 +
2217496-2218092,2218774-2218876,2219140-2219249,
2219328-2219399,2219653-2219814,2220300-2220510,
2220613-2220948,2221050-2221162
Length = 567
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 195 PADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 79
PADL D + G G+H P ST+ G + A + +E
Sbjct: 121 PADLKDLIAGLYGSHPQPSSTDAAEVGTQEGSAVAAAEE 159
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 31.1 bits (67), Expect = 0.94
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 460 CSRTAGCAHCSRAAGCARSSTSGAHCSGTAGC-ARSSTSGAHTGRTARVPLAA 615
C T + C+++A + ++ + A +GTAG A SS S + TA P A+
Sbjct: 107 CGVTTDASACAKSASSSATAAAAAAGAGTAGSTAASSASTGNAASTAAKPTAS 159
>10_08_0631 - 19435796-19436452,19437237-19438130
Length = 516
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -1
Query: 307 EQIRQKASPLSKFR*HLQCSNNPVRHAVHLLTSTATHTRRFA*RCSRVLRC 155
++I+ ASPLSK R HL CSN P + + T T + R +V++C
Sbjct: 466 DEIQVSASPLSK-RWHLVCSNIPNNISYLVSTFTLANCRTTDIGTKKVMQC 515
>02_02_0028 +
6196453-6196512,6196936-6197320,6197843-6197925,
6198060-6198183,6198404-6198523,6198595-6198755,
6198999-6199157,6199272-6199434,6199604-6199729,
6199775-6199900,6200400-6200764,6201204-6201404,
6201685-6201794,6201919-6202003,6202553-6202681,
6202763-6202868,6202984-6203072,6203172-6203474
Length = 964
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 104 LFLPPAATVSVEGGD--ACAPEYPGTASCKSAGVCSSA 211
L +PP +V GD + A + P ASC++AG C++A
Sbjct: 99 LQIPPPERRAVGDGDLLSSAGDLPDAASCRAAGSCAAA 136
>10_08_0742 + 20244984-20247008
Length = 674
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -2
Query: 201 HTPADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQECDSVLRLDGTGKVVINLTI 22
H DL+ V S P + T GGK N S Q + + DG+ K ++N+TI
Sbjct: 161 HVGVDLNSLVSNVS----EPAAYFTDGGGGKRNLTLESAQPIQAWVDYDGSAK-ILNVTI 215
Query: 21 SRV 13
+ V
Sbjct: 216 APV 218
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 569 VDERAQPAVPEQCAPEVDERAQPAAREQ 486
+DERA P Q AP V +RA + +E+
Sbjct: 765 IDERAPQMTPRQAAPSVTQRASASIQER 792
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 448 YCAHCSRTAGCAHCSRAAGCARSSTSGAHCSG 543
+C HC AG HC + G T+ HC+G
Sbjct: 171 FC-HCWDAAGSPHCKKRRG-GEEGTASPHCNG 200
>02_05_0977 - 33239887-33240566,33241010-33241985
Length = 551
Score = 29.1 bits (62), Expect = 3.8
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 8/140 (5%)
Frame = -2
Query: 426 RAQVAALEQHVQSARLCALLLEH---GADSLLTSRRRQRPASVNKSDRRRLHCQSLDSTC 256
RA+VAALEQ + +A L + G+ S R P+ V K DR L +
Sbjct: 169 RARVAALEQFIGTALALHAKLNNGGSGSSSPAPPSRAAFPSWVTKHDRHLLSSPASTIAP 228
Query: 255 NAPIIL-----FVTQSIC*PALLHTPADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWR 91
+A + L + S A+ P H G V AG
Sbjct: 229 DAVVALDGSGTHTSISDAIAAVTAPPPPAHHPTASGGGGGGRSRKVIYVKAGRYEESVSI 288
Query: 90 SVQECDSVLRLDGTGKVVIN 31
+ ++ D +L DG GK VI+
Sbjct: 289 TSKQKDVMLLGDGKGKTVIS 308
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 572 EVDERAQPAVPEQCAPEVDERAQPAAREQCAQPA--VREQCAQYTR 441
E +RA+ A ++ A E ERA ARE+ A+ A +E+ A+ R
Sbjct: 594 EARQRAERAAVQKAAAEARERAAAEARERAAKAAAEAKERVAEEAR 639
>03_04_0112 -
17375871-17376099,17377021-17377054,17377237-17377470,
17377636-17377705
Length = 188
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +1
Query: 409 CRYLRALIYFRRVYCAHCSRTAGCAHCSRAAGCARSSTSGAHCSGTA 549
CR + ++ C + A C + GC +T AHCS A
Sbjct: 28 CRSEQPTALLQKAIDYSCGQGADCTSILSSGGCYNPNTVAAHCSWAA 74
>03_03_0217 + 15500943-15502196
Length = 417
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 427 LIYFRRVYCAHCSRTAGCAHCSRAAGCARSSTSGAHCSGTAGCARSSTSGAHTGR 591
L+ F Y CS A AH R G + + A + A A + ++G GR
Sbjct: 67 LLGFFSAYLRRCSEAATAAHRLRGGGGGGAVHASAAVAAAAAAAFAGSAGRRRGR 121
>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
Length = 668
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/84 (27%), Positives = 34/84 (40%)
Frame = +1
Query: 364 QQESAEPCRLHVLLECRYLRALIYFRRVYCAHCSRTAGCAHCSRAAGCARSSTSGAHCSG 543
+ ESA R LL R R + R Y C++T ++ + S+SG+ G
Sbjct: 62 RMESALELRGRALLSLRRYRDVAEMLRDYIPSCAKTCSGDDTLSSSTSSSLSSSGSGDLG 121
Query: 544 TAGCARSSTSGAHTGRTARVPLAA 615
T A+ + H A P AA
Sbjct: 122 TISRAKLLSPDRHRSDAAAEPGAA 145
>02_04_0538 +
23739830-23740126,23740205-23740261,23740344-23740441,
23740565-23740640,23741316-23741345,23741833-23741961,
23742077-23742123,23742477-23742531,23742939-23743038,
23743568-23743674,23743760-23743906,23744232-23744378,
23744473-23744526,23744873-23744914
Length = 461
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +1
Query: 454 AHCSRTAGCAHCSRAAGCARSSTSGAHCSGTAGCARSSTSGAHTGRTARV 603
A C R GC C A+ + A GT+ A S GRT+ V
Sbjct: 67 ASCRRDGGCGGCGCRRRRAKGKPAAAELGGTSKVALPDGSPHSRGRTSYV 116
>02_01_0406 - 2958933-2962076
Length = 1047
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 2 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQLFLPPAATVSVEGGDACAPEYPGTAS 181
+H+ I L L + N +L+ SCTE+ L +S +GG A GT
Sbjct: 8 KHSNKFPIPVLALALVLLINLASLTSSCTEQDRSSLLKFIRELSQDGG-LSASWQDGTDC 66
Query: 182 CKSAGV-CSSAGQQMD 226
CK G+ CS G D
Sbjct: 67 CKWDGIACSQDGTVTD 82
>03_05_0906 +
28671977-28672111,28672197-28672253,28672678-28672854,
28672935-28673021,28675339-28675403,28676914-28677010,
28677162-28677248
Length = 234
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = -2
Query: 453 AVYTSEVDERAQVAALEQHVQSARLCALLLEHGADSLLTSRRRQRPAS-VNKSDRRRLHC 277
AV +ER +++A+ + + +A+ L + L Q P+S N+ D R L
Sbjct: 41 AVTARTAEEREKLSAISRRISAAKAKIKTLSQSEEPLTIVSPAQHPSSCTNQEDFRPLFH 100
Query: 276 QSLDSTCNAPIILFVT 229
D P I ++
Sbjct: 101 DKYDDNSGGPSIATIS 116
>03_05_1070 + 30125131-30127029
Length = 632
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -2
Query: 123 AAGGKNNCAWRSVQECDS-VLRLD 55
A GG+ AWRS DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544
>01_05_0656 + 24011784-24011844,24012737-24012862,24014761-24016052
Length = 492
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +1
Query: 445 VYCAHCSRTAGC-AHCSRAAGCARSSTSGAHCSGTAGCARSSTSGAHTGRTAR 600
V C C + C AH A SST A A CA+ SG G A+
Sbjct: 174 VQCEPCPAPSPCHAHAGALFDPAASSTYAAFNCSAAACAQLGDSGEANGCDAK 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,985,914
Number of Sequences: 37544
Number of extensions: 355525
Number of successful extensions: 1553
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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