Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17g17
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ... 31 0.84
AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in ... 30 1.9
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 30 1.9
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in... 29 2.6
AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in ... 29 2.6
AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in ... 29 2.6
AF016451-3|AAB66001.1| 388|Caenorhabditis elegans Prion-like-(q... 29 2.6
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 29 3.4
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr... 29 3.4
U61953-3|AAC48071.3| 491|Caenorhabditis elegans Hypothetical pr... 29 3.4
U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 28 5.9
M32877-1|AAA28001.1| 669|Caenorhabditis elegans daf-1 protein. 25 6.6
AF067616-10|AAC19189.2| 668|Caenorhabditis elegans Abnormal dau... 25 6.6
AF067616-9|AAP82657.1| 669|Caenorhabditis elegans Abnormal daue... 25 6.6
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 28 7.9
>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
protein F07G11.9 protein.
Length = 2025
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 152 CAPEYPGTASCKSAGVCSSAGQQMDC 229
C P+ PG + C +AG C S + DC
Sbjct: 1907 CDPDDPGFSCCGAAGYCGSGKEYCDC 1932
>AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 4 protein.
Length = 339
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -3
Query: 533 CAPEVDERAQPAAREQCAQPAVREQCAQYTRLK*MSARR*RHSSNTCSLHGSALSCWSTA 354
CA V ++ QCA PA ++ C +++ SA +TC A SC++ A
Sbjct: 70 CAQPVQQQTYQVQASQCA-PACQQSC----QMQCQSAPSVSQCQSTCQQSCQASSCYTPA 124
Query: 353 PTRY*P 336
P + P
Sbjct: 125 PVQCQP 130
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = -3
Query: 587 PVCAPEVDE-RAQPAVPEQCAPEVDERAQPAARE---QCAQ--PAVREQCA 453
PV AP++ P +QCAP+ + A P ++ C Q P ++QCA
Sbjct: 267 PVVAPQIITLEVVPQCQQQCAPQCQQPAAPQCQQCQTTCQQFAPVCQQQCA 317
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = -3
Query: 587 PVCAPEVDE-RAQPAVPEQCAPEVDERAQPAARE---QCAQ--PAVREQCA 453
PV AP++ P +QCAP+ + + P ++ C Q P ++QCA
Sbjct: 368 PVIAPQIITLEVVPECQQQCAPQCQQPSAPQCQQCQNTCQQFAPVCQQQCA 418
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 563 ERAQPAVPEQCAPEVDERAQPAAREQCAQPAVREQCAQ 450
++A P +QCAP+ +++ PA ++ +QC Q
Sbjct: 270 QQAAPVCQQQCAPQCQQQSAPACQQCQTSCQQTQQCQQ 307
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Frame = -3
Query: 581 CAPEVDERAQPAVP---EQCAPEVDERAQPAARE-----QCAQPAVREQCA 453
C + Q AVP +QCAP+ + + P ++ Q A P ++QCA
Sbjct: 231 CTQQCQTTCQQAVPQCQQQCAPQCQQPSAPQCQQCQNTCQQAAPVCQQQCA 281
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 563 ERAQPAVPEQCAPEVDERAQPAAREQCAQPAVREQCAQ 450
++A P +QCAP+ +++ PA ++ +QC Q
Sbjct: 270 QQAAPVCQQQCAPQCQQQSAPACQQCQTSCQQTQQCQQ 307
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Frame = -3
Query: 590 RPVCAPEVDERA--QPAVPEQCAPEVDERAQPAARE----QCAQPAVREQCAQ 450
+P C P ++ Q P QC P+ ++ Q + Q QP ++QC Q
Sbjct: 130 QPSCMPACEQSCVVQTPAPVQCVPQCQQQCQQQCVQTQPIQQCQPQCQQQCVQ 182
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Frame = -3
Query: 581 CAPEVDERAQPAVP---EQCAPEVDERAQPAARE-----QCAQPAVREQCA 453
C + Q AVP +QCAP+ + + P ++ Q A P ++QCA
Sbjct: 231 CTQQCQTTCQQAVPQCQQQCAPQCQQPSAPQCQQCQNTCQQAAPVCQQQCA 281
>AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 8 protein.
Length = 445
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 578 APEVD-ERAQPAVPEQCAPEVDERAQPAAREQCAQPAVREQC 456
AP V ++ QP +QC ++ QPAA QC QP ++QC
Sbjct: 129 APVVQYQQCQPVCQQQCQSTCVQQQQPAA--QC-QPQCQQQC 167
>AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 7 protein.
Length = 438
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 578 APEVD-ERAQPAVPEQCAPEVDERAQPAAREQCAQPAVREQC 456
AP V ++ QP +QC ++ QPAA QC QP ++QC
Sbjct: 129 APVVQYQQCQPVCQQQCQSTCVQQQQPAA--QC-QPQCQQQC 167
>AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 6 protein.
Length = 388
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 578 APEVD-ERAQPAVPEQCAPEVDERAQPAAREQCAQPAVREQC 456
AP V ++ QP +QC ++ QPAA QC QP ++QC
Sbjct: 129 APVVQYQQCQPVCQQQCQSTCVQQQQPAA--QC-QPQCQQQC 167
>AF016451-3|AAB66001.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 5
protein.
Length = 388
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 578 APEVD-ERAQPAVPEQCAPEVDERAQPAAREQCAQPAVREQC 456
AP V ++ QP +QC ++ QPAA QC QP ++QC
Sbjct: 129 APVVQYQQCQPVCQQQCQSTCVQQQQPAA--QC-QPQCQQQC 167
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +1
Query: 442 RVYCAHCSRTAGCAHCSRAAGCARSSTSGAHCSGTAGCARSSTSGAHTGRTAR 600
R C C R C C R C R T C GC GR R
Sbjct: 72 RPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGCCGCGGGGRKRR 124
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +1
Query: 442 RVYCAHCSRTAGCAHCSRAAGCARSSTSGAHCSGTAGCARSSTSGAHTGRTAR 600
R C C R C C R C R T C GC GR R
Sbjct: 75 RPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGCGCGCCGCGGGGRKRR 127
>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein
T01C4.1 protein.
Length = 1484
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 152 CAPEYPGTASCKSAGVCSSAGQQMDC 229
C P+ PG + C +AG C S + +C
Sbjct: 1370 CDPDDPGFSCCGAAGYCGSEEEYCEC 1395
>U61953-3|AAC48071.3| 491|Caenorhabditis elegans Hypothetical
protein R08C7.5 protein.
Length = 491
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 599 RAVRPVCAPEVDERAQPAVPEQCAPEVDERAQPA 498
+ ++P+ A ++ A+PAVP++ P A+PA
Sbjct: 362 KEIKPIVAKITEKAAEPAVPKEVKPAKAATAKPA 395
>U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical
protein F28B4.2 protein.
Length = 860
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -2
Query: 201 HTPADLHDAVPGYSGAHASPPSTETVAAGGKNNCAWRSVQE 79
+ P ++ VP Y P TE+ G ++ W SV+E
Sbjct: 25 YVPPQGYEGVPRYRAIDPDRPKTESSEMSGADHLEWESVKE 65
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 469 TAGCAHCSRAAGCARSSTSGAH-CSGTAG 552
T C +CS A CA++ TSGA+ C AG
Sbjct: 1200 TPRCTNCSIHAYCAQNPTSGAYQCKCNAG 1228
>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
protein C49C3.4 protein.
Length = 1566
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/53 (39%), Positives = 26/53 (49%)
Frame = +1
Query: 463 SRTAGCAHCSRAAGCARSSTSGAHCSGTAGCARSSTSGAHTGRTARVPLAART 621
S T G A S G A S+T+G S T G A S+T+G T A A+ T
Sbjct: 527 STTTGEAS-STTTGEASSTTTGEASSTTTGEASSTTTGEATSVAATTSSASST 578
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +1
Query: 442 RVYCAHCSRTAGCAHCSRAAGCARSSTSGAHCSGTAGC 555
R C C R C C R C R T C GC
Sbjct: 70 RPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 107
>M32877-1|AAA28001.1| 669|Caenorhabditis elegans daf-1 protein.
Length = 669
Score = 25.4 bits (53), Expect(2) = 6.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 430 IYFRRVYCAHCSRTAGC 480
+ F R++ HCSR GC
Sbjct: 48 VNFTRLHLCHCSREVGC 64
Score = 21.0 bits (42), Expect(2) = 6.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 484 HCSRAAGCARSST 522
HCSR GC +T
Sbjct: 57 HCSREVGCNARTT 69
>AF067616-10|AAC19189.2| 668|Caenorhabditis elegans Abnormal dauer
formation protein1, isoform b protein.
Length = 668
Score = 25.4 bits (53), Expect(2) = 6.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 430 IYFRRVYCAHCSRTAGC 480
+ F R++ HCSR GC
Sbjct: 48 VNFTRLHLCHCSREVGC 64
Score = 21.0 bits (42), Expect(2) = 6.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 484 HCSRAAGCARSST 522
HCSR GC +T
Sbjct: 57 HCSREVGCNARTT 69
>AF067616-9|AAP82657.1| 669|Caenorhabditis elegans Abnormal dauer
formation protein1, isoform a protein.
Length = 669
Score = 25.4 bits (53), Expect(2) = 6.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 430 IYFRRVYCAHCSRTAGC 480
+ F R++ HCSR GC
Sbjct: 48 VNFTRLHLCHCSREVGC 64
Score = 21.0 bits (42), Expect(2) = 6.6
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 484 HCSRAAGCARSST 522
HCSR GC +T
Sbjct: 57 HCSREVGCNARTT 69
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Frame = -3
Query: 599 RAVRPVCAPEVDERAQPAVP---EQCAPEVDERAQPAARE---QCAQ--PAVREQCA 453
+ ++P C E Q AVP +QCAP+ + + P ++ C Q P ++QCA
Sbjct: 316 QCIQP-CTVECQTACQQAVPQCQQQCAPQCYQPSAPQCQQCQNTCQQFAPVCQQQCA 371
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,506,629
Number of Sequences: 27780
Number of extensions: 274389
Number of successful extensions: 1256
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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