Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17g17
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    24   1.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.7  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   2.2  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = +1

Query: 439 RRVYCAHCSRTAGCAHCSRAAGCARSSTSGAHCSGTAGCARSSTS 573
           RRV C   S        + AA C     +G HC    GC    TS
Sbjct: 42  RRVTCDLLSFKGQVNDSACAANCLSLGKAGGHCE-KVGCICRKTS 85


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 382 ALRSPAGARRRLATDLTS 329
           ALR+  GA  +LATD TS
Sbjct: 59  ALRTELGASTKLATDTTS 76


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +1

Query: 439 RRVYCAHCSRTAGCAHCSRAAGCARSSTSGAHC-SGTAGCARSS 567
           RRV C   S        + AA C     +G HC  G   C ++S
Sbjct: 42  RRVTCDLLSFKGQVNDSACAANCLSLGKAGGHCEKGVCICRKTS 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,685
Number of Sequences: 438
Number of extensions: 2914
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)