Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17g13
         (252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   1.5  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    24   3.5  
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    23   4.7  
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    23   4.7  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    23   6.2  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    23   8.2  

>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 18  FVYVLHKIHKVIDRHKSEVSLCC 86
           ++  L K+HKV+  H S V++ C
Sbjct: 36  YISFLTKLHKVLQTHSSFVNIPC 58


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 116 PTRPCWWDT 142
           P R CWWD+
Sbjct: 251 PARKCWWDS 259


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 144 HVSHQHGRVGAQR-HVNVRQRSIGKLH 67
           HVS  HGR+G  R H   R ++ G  H
Sbjct: 14  HVSAGHGRIGKHRKHPGGRGKAGGLQH 40


>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 144 HVSHQHGRVGAQR-HVNVRQRSIGKLH 67
           HVS  HGR+G  R H   R ++ G  H
Sbjct: 14  HVSAGHGRIGKHRKHPGGRGKAGGLQH 40


>SPCC4B3.12 |set9||histone lysine methyltransferase
          Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = +3

Query: 30 LHKIHKVIDRHKSEVSLCCVV 92
          +HK+ K++DR    +  C ++
Sbjct: 32 IHKVRKLVDRSIERMESCSII 52


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 233 VHKVGAFSATDI 198
           +HK+GAF AT I
Sbjct: 687 LHKIGAFQATQI 698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 835,309
Number of Sequences: 5004
Number of extensions: 10925
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)