Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17g11
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    27   2.8  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   4.9  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   4.9  

>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +1

Query: 295 AVSTYQAIKMVKKVSEESVDSGVGRCSSQSGSERESDETPRGAEQSAPVDI 447
           A++    IK  K      +  G  RC +   +  +SD     ++ S PVD+
Sbjct: 462 AINAIDRIKQKKGYENYRISYGKDRCGNPPRTNSKSDVLSVSSDMSMPVDL 512


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 532 TSCFQDLYKLTGEVLGEGAYA 594
           TSC Q  Y+L  E L +G+Y+
Sbjct: 63  TSCIQAYYELRNESLAKGSYS 83


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +2

Query: 80  F*ECLFITFRHNLRT------SFSTVVLFSLISRIIFGVFFFLHLLTLYRFHVEK 226
           F + L+  F H  R+      S +T VLF  ++ + F  FFF  +L L   +V+K
Sbjct: 600 FQQALYFLFEHPRRSFTLLFPSKTTWVLFLNLTLLNFASFFFFMVLDLGNSYVDK 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,875
Number of Sequences: 5004
Number of extensions: 38141
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)