Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17g02
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-24|AAF60413.1|  660|Caenorhabditis elegans Hypothetical...    29   2.4  
AC132211-1|AAN01434.1|  262|Caenorhabditis elegans Hypothetical ...    29   3.2  

>AC006708-24|AAF60413.1|  660|Caenorhabditis elegans Hypothetical
           protein Y110A7A.19 protein.
          Length = 660

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 155 RETDVEHCQTRRQIVPLCRSLRARIVARSNRIIRRCHVNQKSV 27
           R+ D     T  QI+ L  + RA++   +NRI  +C+VNQ+ V
Sbjct: 607 RKRDTYAAATCLQIMSLTAN-RAKLEPLANRIFEKCNVNQEQV 648


>AC132211-1|AAN01434.1|  262|Caenorhabditis elegans Hypothetical
           protein Y108F1.3 protein.
          Length = 262

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -1

Query: 155 RETDVEHCQTRRQIVPLCRSLRARIVARSNRIIRRCHVNQK 33
           R+ D+    T  QI+ L  + RA++   +NRI  +C+VNQ+
Sbjct: 10  RKRDIYAAATCLQIMSLTAN-RAKLEPLANRIFEKCNVNQE 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,860,077
Number of Sequences: 27780
Number of extensions: 323612
Number of successful extensions: 768
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)