Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17f16
         (269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.15 
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    28   0.26 
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   2.5  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   2.5  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   2.5  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   2.5  
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    23   5.7  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    23   5.7  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    23   7.5  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    23   7.5  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   7.5  
SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ...    23   7.5  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    23   7.5  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 78  CHIWFDTPAPFFSRYHTQTQ 137
           CHI +D PAP F  +H + Q
Sbjct: 26  CHISYDGPAPVFEYFHDKIQ 45


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 0.26
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 174 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 260
           ++QK  +P  DK P   N L+L A   TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 117 RYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKP 212
           +Y T T K  L TPP    HI      F   P
Sbjct: 382 QYDTSTSKAELSTPPSKRRHIDDADLVFHSSP 413


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 174 HIQKIQEPFIDKPPKLQNTLLLTARHSTHP 263
           H QK + P     P++QNT      H THP
Sbjct: 274 HQQK-KTPQSGSTPQMQNTTSQPTTHDTHP 302


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 250 CLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGV 152
           CLA +  +F       + GSWIF   ++ PGG+
Sbjct: 354 CLASSREIFAFARDKGLPGSWIF--RKLTPGGI 384


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 123 HTQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTV 269
           H     + ++   G   H+ KI  P + +PP   + L +     THPT+
Sbjct: 578 HLSAYAISIRMKDGQIRHLAKIISPCVLRPP---DDLNIIPVEDTHPTL 623


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 30  HNFKHGLSSPSSFFNRCHIWFDT 98
           HNF  GL+  S+FF    I   T
Sbjct: 307 HNFMDGLAITSAFFTNTSIGIST 329


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 109 NGAGVSNHMWHRLKND 62
           N A V  H+W R +ND
Sbjct: 655 NSATVEKHIWERKEND 670


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 94  SNHMWHRLKNDDGDDKPCLK 35
           S H   RLKN+D   KP  K
Sbjct: 276 SKHRIARLKNEDNTQKPISK 295


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 18  LHKLHNFKHGLSSPSSFFNRC 80
           LH  + F H + S S F N+C
Sbjct: 752 LHSPYAFFHDIPSISHFLNKC 772


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 155 AARVDLAHTEDPGAVH*QAAEVTEHATINSQTFHTS 262
           +A  ++  +    ++H Q + VTE+ TI   T+ T+
Sbjct: 98  SASNEIISSSTNNSIHQQVSVVTEYVTIQPTTYVTT 133


>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 123

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 73 LKNDDGDDKPCLKL 32
          L  DDGDD P LK+
Sbjct: 51 LDEDDGDDIPALKV 64


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 45  GLSSPSSFFNRCHIWFDTPAPFFS 116
           G  +PSS    C ++ DTPA   S
Sbjct: 399 GYGTPSSAATLCPLYRDTPAAIVS 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,023,137
Number of Sequences: 5004
Number of extensions: 18100
Number of successful extensions: 55
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)