Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17f16
         (269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    29   0.34 
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    29   0.45 
Z81111-2|CAB03266.1|  535|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z74038-1|CAA98497.2|  578|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical...    26   4.2  
AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p...    26   4.2  
Z49071-1|CAA88873.2|  269|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    25   7.3  

>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
           protein B0222.9 protein.
          Length = 1217

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 217 FGGLSMNGSWIFCMCEVYPGGVCNPSF 137
           FGG   N SWI CMC +    +  P++
Sbjct: 708 FGGKVNNASWIACMCAIVAKKLNRPTY 734


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 217 FGGLSMNGSWIFCMCEVYPGGVCNPSFCV 131
           FGG   N SWI C+C V    +  P++ V
Sbjct: 740 FGGKLNNASWIACICSVVAKKLNRPTYGV 768


>Z81111-2|CAB03266.1|  535|Caenorhabditis elegans Hypothetical
           protein T01G5.2 protein.
          Length = 535

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 21  HKLHNFKHGLSSPSSFFNRCHIWFDTPAPFFSR 119
           H L N++H   S S FF   + +FD P P   +
Sbjct: 239 HNLTNWRHLFPSASIFFVNSNPFFDFPRPVLEK 271


>Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical
           protein F58B4.1b protein.
          Length = 611

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = -2

Query: 259 CVECLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGV-CNPSFCVCV*YRLKNGAGVSNHM 83
           C E     SS  C  GG     +   C+C    GG+ C+     C        +  +   
Sbjct: 353 CKELCPAASSAQCKNGGFPSPRNCAICICPSGYGGILCDQRPPGC------GDSVTATTT 406

Query: 82  WHRLKNDDGDDKPCLKLCNLCSCSFYL 2
           W  L N  GD  P L+  N   C++++
Sbjct: 407 WQTLTNTIGDGLPTLR-DNHTMCNYWV 432


>Z74038-1|CAA98497.2|  578|Caenorhabditis elegans Hypothetical
           protein F58B4.1a protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = -2

Query: 259 CVECLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGV-CNPSFCVCV*YRLKNGAGVSNHM 83
           C E     SS  C  GG     +   C+C    GG+ C+     C        +  +   
Sbjct: 353 CKELCPAASSAQCKNGGFPSPRNCAICICPSGYGGILCDQRPPGC------GDSVTATTT 406

Query: 82  WHRLKNDDGDDKPCLKLCNLCSCSFYL 2
           W  L N  GD  P L+  N   C++++
Sbjct: 407 WQTLTNTIGDGLPTLR-DNHTMCNYWV 432


>Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical
           protein K04C1.1 protein.
          Length = 307

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 48  LSSPSSFFNRCHIWFDTPAPFFSRYHTQTQKL 143
           L + S FF R   W D   PF S   T TQ L
Sbjct: 234 LKNSSEFFERLVDWIDLLVPFASDALTLTQPL 265


>U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical
           protein C49H3.3 protein.
          Length = 109

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 167 DLAHTEDPGAVH*QAAEVTEHATINSQTFHTSD 265
           D   T+  G  + +  EVT  ATIN++T    D
Sbjct: 43  DAEKTKTDGTANEEKMEVTSQATINTKTLKKKD 75


>AF067211-16|AAC16988.3|  399|Caenorhabditis elegans Hypothetical
           protein B0205.4 protein.
          Length = 399

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 33  NFKHGLSSPSSFFNRCHIWFDTPAPFFSRYHTQTQKL 143
           + +HG+    +  NR H   DTP  ++ R   Q  K+
Sbjct: 262 HIRHGMDISMNSRNRIHGHVDTPIEYYKRAIQQISKI 298


>AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p450
           family protein 33C1 protein.
          Length = 497

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 21  HKLHNFKHGLSSPSSFFNRCHIWFDTPAPFFSR 119
           ++    KH + SP+  F + HI+     P F++
Sbjct: 191 NEYQELKHIIDSPAEIFGKLHIFLAMNIPIFAK 223


>Z49071-1|CAA88873.2|  269|Caenorhabditis elegans Hypothetical
           protein T22C8.1 protein.
          Length = 269

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 259 CVECLAVNSSVFCNFGGLSMNGSW-IFCMCEVYPGGVCNPSFCVCV 125
           CV    + + +F N   LS+   W IFC C      + NP F + V
Sbjct: 162 CVNITDILTPLFKN-ADLSIQWIWTIFCYCTTISNQLVNPLFFLTV 206


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 255 WNVWLLIVACSVTSAAC 205
           WN W    ACS T  AC
Sbjct: 493 WNSWSPWTACSATCGAC 509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,962,976
Number of Sequences: 27780
Number of extensions: 119115
Number of successful extensions: 303
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)