Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17f15
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1075 - 8770120-8770371,8770684-8770770,8770866-8770946,877... 86 3e-17
03_02_0643 - 10090720-10091007,10091121-10091228,10091314-100914... 81 1e-15
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 41 9e-04
05_04_0403 + 20997191-20998816 34 0.13
01_06_1510 - 37859664-37861319 33 0.17
03_05_1095 - 30360067-30360254,30360364-30360484,30360564-303608... 33 0.31
11_01_0290 - 2187273-2187311,2187473-2187582,2187747-2187867,218... 29 3.8
>06_01_1075 -
8770120-8770371,8770684-8770770,8770866-8770946,
8771043-8771177,8771363-8771584,8771676-8771756,
8771954-8772115,8772991-8773106,8774333-8774474,
8774592-8774687,8774987-8775125,8776297-8776376
Length = 530
Score = 85.8 bits (203), Expect = 3e-17
Identities = 60/154 (38%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Frame = +1
Query: 124 MCGIWATFGVTG---GLTPTCVKCFSNIRHRGPDAWRIEQDAREPLAILGFQRLAIVDGR 294
MCGI A GV ++ +RHRGPD W ++ L QRLAIVD
Sbjct: 1 MCGILAVLGVADVSLAKRSRIIELSRRLRHRGPD-WSGIHCYQD--CYLAHQRLAIVDPT 57
Query: 295 HGMQPMRLHCYPRTTLIC-NGEIYNCKRLQ---KQHEFQYETNCDVEAIIHLYQRFGIEE 462
G QP L+ ++ ++ NGEIYN + L+ K H+FQ ++C+V I HLY+ +G EE
Sbjct: 58 SGDQP--LYNEDKSVVVTVNGEIYNHEELKANLKSHKFQTASDCEV--IAHLYEEYG-EE 112
Query: 463 AVTNLDGVFSFCLVDGEKNKVYIARDPYGVRPLF 564
V LDG+F+F L+D ARD G+ PL+
Sbjct: 113 FVDMLDGMFAFVLLDTRDKSFIAARDAIGICPLY 146
>03_02_0643 -
10090720-10091007,10091121-10091228,10091314-10091400,
10091488-10091568,10091669-10091803,10091919-10092140,
10092377-10092457,10092565-10092726,10092851-10093041,
10093190-10093331,10093449-10093547,10093668-10093806,
10094355-10094392
Length = 590
Score = 80.6 bits (190), Expect = 1e-15
Identities = 60/145 (41%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Frame = +1
Query: 196 IRHRGPDAWRIEQDAREPLAILGFQRLAIVDGRHGMQPMRLHCYPRT-TLICNGEIYNCK 372
++HRGPD + Q LA QRLAIV G QP L+ RT ++ NGEIYN K
Sbjct: 14 LKHRGPDWSGLYQCEGNFLAQ---QRLAIVSPLSGDQP--LYNADRTIVVVANGEIYNHK 68
Query: 373 RLQKQH--EFQYETNCDVEAIIHLYQRFGIEEAVTNLDGVFSFCLVDGEKNKVYIARDPY 546
+++KQ + + T D E II LY+ +G E+ V LDGVF+F L D ARD
Sbjct: 69 KIRKQFASKHTFSTGSDCEVIIPLYEEYG-EDFVDMLDGVFAFVLYDTRTKTYMAARDAI 127
Query: 547 GVRPLFSFHDPENDVLAICSEAKGL 621
GV PL+ + V I SE K L
Sbjct: 128 GVNPLYIGRGSDGAVW-ISSEMKAL 151
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 41.1 bits (92), Expect = 9e-04
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Frame = +1
Query: 295 HGMQPMRLHCYPRTT-LIC--NGEIYNCKRLQKQHEFQYETNCDVEAIIHLYQR------ 447
HG P+ + T + C G I N L++Q+ + + ++ II Y+
Sbjct: 58 HGQSPLLPRLFAATDEIFCLFQGTIENIAVLKQQYGLHNKGSTEINIIIEAYRTLRDRGP 117
Query: 448 FGIEEAVTNLDGVFSFCLVDGEKNKVYIARDPYGVRPLFSFHDPEN 585
+ ++ V +++G F+F L D N V++A D G P + DP++
Sbjct: 118 YPADQVVRDINGKFAFVLYDCSNNSVFMATDADGSVPFYWGVDPDS 163
>05_04_0403 + 20997191-20998816
Length = 541
Score = 33.9 bits (74), Expect = 0.13
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Frame = +1
Query: 349 NGEIYNCKRLQKQHEFQ---YETNCDVEAIIHLYQRF-------GIEEAVTNLDGVFSFC 498
NG + N + L+ + E + + T+ D E I+HL I +A L G +S
Sbjct: 183 NGNLVNYQALRNKLEARGSIFNTSSDTEVILHLIATSLSRPLLSRICDACERLAGAYSLL 242
Query: 499 LVDGEKNKVYIARDPYGVRPLFSFHDPENDVLAICSEAKGL 621
+ +K ++ RDP+G RPL N +A SE L
Sbjct: 243 FLTADK--MFAVRDPHGFRPLV-LGRRRNGTVAFASETCAL 280
>01_06_1510 - 37859664-37861319
Length = 551
Score = 33.5 bits (73), Expect = 0.17
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Frame = +1
Query: 349 NGEIYNCKRLQKQHEFQ---YETNCDVEAIIHLYQRF-------GIEEAVTNLDGVFSFC 498
NG + N + L+ + E Q + T+ D E I+HL I +A L G +S
Sbjct: 189 NGNLVNYQALRNKLEAQGSIFSTSSDTEVILHLIATSLSRPLLARICDACERLAGAYSLL 248
Query: 499 LVDGEKNKVYIARDPYGVRPL 561
+ +K + RDP+G RPL
Sbjct: 249 FLTADK--LLAVRDPFGFRPL 267
>03_05_1095 -
30360067-30360254,30360364-30360484,30360564-30360804,
30362361-30362566
Length = 251
Score = 32.7 bits (71), Expect = 0.31
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Frame = +1
Query: 352 GEIYNCKRLQKQHEFQYETNCDVEAIIHLYQRFG------IEEAVTNLDGVFSFCLVDGE 513
G I N L KQH +T +V +I Y+ + V +L G F+F L D
Sbjct: 83 GHIENIASL-KQHYGLSKTATEVTILIEAYRTLRDRGPLPASQVVRDLSGKFTFILYDTL 141
Query: 514 KNKVYIARDPYGVRPLFSFHDPENDVL 594
++A D G P F D EN ++
Sbjct: 142 SKSTFVAADADGSIPFFWGVDSENHLV 168
>11_01_0290 -
2187273-2187311,2187473-2187582,2187747-2187867,
2188001-2188241,2190128-2190330
Length = 237
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Frame = +1
Query: 352 GEIYNCKRLQKQHEFQYETNCDVEAIIHLYQR------FGIEEAVTNLDGVFSFCLVDGE 513
G + N RL +Q+ N +V +I Y+ + ++ L G ++F L D
Sbjct: 82 GVLDNLGRLSQQYGLSKGAN-EVLLVIEAYKTLRDRAPYPASFMLSQLTGSYAFVLFDKS 140
Query: 514 KNKVYIARDPYGVRPLF 564
+ + +A DP G PLF
Sbjct: 141 TSSLLVASDPEGKVPLF 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,255,355
Number of Sequences: 37544
Number of extensions: 392408
Number of successful extensions: 893
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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