Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17f11
         (142 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    24   0.57 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    22   3.0  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     21   5.3  

>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 21  NFCIANSDGVTIQHKMLTNVLSFLL 95
           +FCI N     I+H+ L N +  LL
Sbjct: 100 DFCIHNQKSADIKHRALHNEIKSLL 124


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 91   KKLNTLVNILC*IVTPSLLAMQKL 20
            K+L + ++ L  I TP++ AMQKL
Sbjct: 1008 KELQSKLDTLEKIQTPNMKAMQKL 1031


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 6   GSKFVNFCIANSDGVTIQHK 65
           GSK++  C A+ DG  +++K
Sbjct: 749 GSKWIFNCKADEDGHFVRYK 768


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,197
Number of Sequences: 2352
Number of extensions: 1334
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 26
effective length of database: 502,827
effective search space used: 10056540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)