Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17f11
         (142 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   1.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   3.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   4.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   4.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    18   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 36  NSDGVTIQHKMLTNVLSFLLEKY 104
           +S  + I HKMLT + S  ++ Y
Sbjct: 242 HSSTLDIDHKMLTPIKSEPIDAY 264


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 66  MLTNVLSFLLEKY 104
           M  N+L FL +KY
Sbjct: 339 MFINILKFLKQKY 351


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 76  TC*VFCWKNI 105
           TC + CW NI
Sbjct: 104 TCVLSCWTNI 113


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 76  TC*VFCWKNI 105
           TC + CW NI
Sbjct: 157 TCVLSCWTNI 166


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 123 SLFIFNNIFPTKNLTRWLTF 64
           S   F  +F   N+T W+ F
Sbjct: 405 SRVFFPFLFAVLNVTYWIMF 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,708
Number of Sequences: 438
Number of extensions: 407
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)