Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17f08
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    27   6.8  
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U80448-7|AAB37820.1|  260|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical ...    27   9.0  
AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h at...    27   9.0  
AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein...    27   9.0  

>U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical
           protein B0495.7 protein.
          Length = 895

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 45  PHLPAVH---PADQRTRLWQPSPSPSVLSYP 128
           P+  A+H   P +Q   LW P PSP VL YP
Sbjct: 714 PYYTAIHELFPPEQS--LWVPVPSPVVLPYP 742


>Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical
           protein F18H3.3b protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 69  ADQRTRLWQPSPSPSVLSYP-NSTISYTSLILLDVSEATVCAE*YSIYCRLGPILHCR 239
           A Q   + Q  P P+ + YP N+T S  SL + D+      A  +  +   GP+L  R
Sbjct: 30  AGQPQAVIQQGPPPTNIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIR 87


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 69  ADQRTRLWQPSPSPSVLSYP-NSTISYTSLILLDVSEATVCAE*YSIYCRLGPILHCR 239
           A Q   + Q  P P+ + YP N+T S  SL + D+      A  +  +   GP+L  R
Sbjct: 30  AGQPQAVIQQGPPPTNIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIR 87


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 9   KWLNCQQSSQSQPHLPAVHPADQRTRLWQPSPSPSV--LSYPNSTISYTSLILLDVSE 176
           +W NC   ++  P   +     + TR  +P+P      ++Y +ST S T++     SE
Sbjct: 308 RWTNCSFVTEPTPSSTSSETTPETTRKSRPNPGKPTPDVTYSSSTDSTTAITSHSTSE 365


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 30  SSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYT 149
           S ++ P LPA HP    +    P  +P+  + P +++S T
Sbjct: 55  SGRNSPALPAPHPGIPSSSYHPPVSTPTPTAAPTTSLSST 94


>U80448-7|AAB37820.1|  260|Caenorhabditis elegans Hypothetical
           protein F59A3.7 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 401 FIGAVNSWSEAVCSISTIQTLNFTNVLVLSTFWYVFH*SAIFHLQ 535
           F+G+V ++   +  + +I     + +L+  +FWYV   + I H +
Sbjct: 114 FVGSVETFHSIITILHSIFQFFISIILIRMSFWYVIVLTHICHFE 158


>AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical
           protein Y32B12B.3 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 104 FPFCSLLPKFNYFLHV 151
           +PFC+   KF YFLH+
Sbjct: 55  YPFCASFNKFYYFLHL 70


>AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h
           atpase protein 11, isoforma protein.
          Length = 384

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 408 ELLIHGQRQYAPLVRF-KP*ILQMFWSYLH 494
           +L+   QRQYAPL+R+ K    ++F +Y+H
Sbjct: 269 KLMAEKQRQYAPLIRWLKINFGEIFAAYIH 298


>AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein
           protein.
          Length = 384

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 408 ELLIHGQRQYAPLVRF-KP*ILQMFWSYLH 494
           +L+   QRQYAPL+R+ K    ++F +Y+H
Sbjct: 269 KLMAEKQRQYAPLIRWLKINFGEIFAAYIH 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,852,052
Number of Sequences: 27780
Number of extensions: 255849
Number of successful extensions: 706
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)