Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17f02
         (282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   1.2  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   2.7  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   2.7  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    24   3.6  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    23   8.3  

>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 237 LGKGATGAVFQGVN 278
           LGKGA GAV++G+N
Sbjct: 15  LGKGAFGAVYRGLN 28


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 172 QKIRKCHSCVVQRITCGARPVSSGK 246
           +KI K  SC   RITC  RPV   K
Sbjct: 18  EKIAKLESCNDSRITC--RPVRESK 40


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 241 PRTLVVLHT*FSEPRKND 188
           P+  VVL+T FS+P K+D
Sbjct: 194 PKFTVVLYTSFSQPSKSD 211


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 162 IRITKNTKMSFLRGSENYVWSTTSVLG 242
           + IT N  ++  +G++  ++STTSV+G
Sbjct: 296 MNITYNFPVTEYKGTKTIMFSTTSVIG 322


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 237 LGKGATGAVFQGVN 278
           +G+G+ G +FQGVN
Sbjct: 21  IGEGSFGMLFQGVN 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,286
Number of Sequences: 5004
Number of extensions: 14138
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)