Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17f02
(282 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0453 - 16058125-16058407,16059104-16059507 29 0.42
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600... 26 3.9
11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155 26 5.2
10_01_0318 + 3493913-3496976,3497064-3497392 26 5.2
08_02_1293 - 25945888-25946026,25946257-25946315,25946458-259465... 26 5.2
06_03_0516 + 21661696-21662490 26 5.2
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741... 26 5.2
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 26 5.2
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 26 5.2
03_02_0444 - 8543426-8543635,8543945-8544151,8544293-8544400,854... 25 9.0
>04_03_0453 - 16058125-16058407,16059104-16059507
Length = 228
Score = 29.5 bits (63), Expect = 0.42
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 219 WSTTSVLGKGATGAVFQGVNK 281
WS S LG+G+ G VF+G+ K
Sbjct: 115 WSRGSFLGRGSFGMVFEGITK 135
>04_04_0590 +
26457514-26457801,26458849-26459325,26459817-26460027,
26460219-26460376,26460461-26460531,26460707-26460812,
26460880-26460966,26461591-26462148,26462245-26462308,
26463352-26463485,26463568-26463621,26464321-26464417,
26465620-26465825,26465901-26465984,26466265-26466330,
26466883-26466956,26467664-26467751,26467830-26467928
Length = 973
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 191 ILAWFRELRVEHDQCPRER 247
+ AW RE+RV+H P ER
Sbjct: 32 VAAWAREIRVDHLSPPSER 50
>11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155
Length = 871
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 219 WSTTSVLGKGATGAVFQG 272
+STT++LG G G VF+G
Sbjct: 556 FSTTNLLGSGTFGTVFKG 573
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 180 TKMSFLRGSENYVWSTTSVLGKGATGAVFQ 269
T LRG++N WS V+G+G G V++
Sbjct: 843 TYEDILRGTDN--WSEKYVIGRGRHGTVYR 870
>08_02_1293 -
25945888-25946026,25946257-25946315,25946458-25946543,
25946800-25946845,25946953-25947405
Length = 260
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 163 LELQKIRKCHSCVVQRITCGARPVSSGKERQVLYS 267
L+L+ CH C V+ ++C S +++ L+S
Sbjct: 132 LDLRVAPTCHDCTVEMLSCRFEGSGSVEQQNELFS 166
>06_03_0516 + 21661696-21662490
Length = 264
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 271 PWNTAPVAPFPRT 233
PW T P AP+P T
Sbjct: 179 PWRTTPTAPYPLT 191
>04_03_0618 -
18071612-18072795,18073007-18073072,18074101-18074175,
18074234-18074963
Length = 684
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 228 TSVLGKGATGAVFQGVN 278
TS++G+G G VF+G N
Sbjct: 366 TSIIGEGGQGTVFKGYN 382
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 280 LLTPWNTAPVAPFPRTLVVLHT*FSEPRKND 188
L++ WN P+ +P T+ VL S +ND
Sbjct: 624 LMSKWNGKPIVGYPITVEVLKDSSSAASRND 654
>01_01_0660 +
5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 264 IQHLSLLSRGHWSCSTRNSLNHARMTFSYFL 172
+ HLS L+R WS + R+SL R +FL
Sbjct: 508 LSHLSRLTRSEWS-TIRSSLGKPRRFSDHFL 537
>03_02_0444 -
8543426-8543635,8543945-8544151,8544293-8544400,
8544744-8544803,8544914-8544989,8545190-8545347,
8545479-8545541,8545653-8545737,8546423-8547438
Length = 660
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 219 WSTTSVLGKGATGAVFQGVN 278
W+ +LG G+ G VF+G++
Sbjct: 319 WNRGMLLGSGSFGTVFEGIS 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,770,198
Number of Sequences: 37544
Number of extensions: 76575
Number of successful extensions: 294
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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