Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17f02
         (282 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56964-4|AAB54030.1|  536|Caenorhabditis elegans Hypothetical pr...    29   0.51 
U56964-3|AAL65786.1|  522|Caenorhabditis elegans Hypothetical pr...    29   0.51 
Z35663-6|CAD82917.1|  606|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z35663-5|CAA84727.1|  681|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U29154-4|AAA68420.2|  288|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AF098985-1|AAC67419.2|  882|Caenorhabditis elegans Hypothetical ...    25   8.4  

>U56964-4|AAB54030.1|  536|Caenorhabditis elegans Hypothetical
           protein F52E4.1a protein.
          Length = 536

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 195 LRGSENYVWSTTSVLGKGATGAV 263
           LRG  NY W T  V   GA GAV
Sbjct: 443 LRGDINYAWPTAEVAVMGAKGAV 465


>U56964-3|AAL65786.1|  522|Caenorhabditis elegans Hypothetical
           protein F52E4.1b protein.
          Length = 522

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 195 LRGSENYVWSTTSVLGKGATGAV 263
           LRG  NY W T  V   GA GAV
Sbjct: 429 LRGDINYAWPTAEVAVMGAKGAV 451


>Z35663-6|CAD82917.1|  606|Caenorhabditis elegans Hypothetical
           protein T04A8.7b protein.
          Length = 606

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 277 LTPWNTAPVAPFPRTLVVLHT*FSEP 200
           L+PW T    P P+  V+ H  F  P
Sbjct: 61  LSPWATFVTCPNPKETVIYHQNFWNP 86


>Z35663-5|CAA84727.1|  681|Caenorhabditis elegans Hypothetical
           protein T04A8.7a protein.
          Length = 681

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 277 LTPWNTAPVAPFPRTLVVLHT*FSEP 200
           L+PW T    P P+  V+ H  F  P
Sbjct: 136 LSPWATFVTCPNPKETVIYHQNFWNP 161


>U29154-4|AAA68420.2|  288|Caenorhabditis elegans Hypothetical
           protein T07F12.4 protein.
          Length = 288

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 183 KMSFLRGSENYVWSTTSVLGKGATGAVFQG 272
           K   L     Y+ S  +++G GA GAVF+G
Sbjct: 7   KQIILDEKYEYMDSVDAMIGMGAFGAVFKG 36


>AF098985-1|AAC67419.2|  882|Caenorhabditis elegans Hypothetical
           protein C08G5.1 protein.
          Length = 882

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 97  EKFQSIYSIKGLITNEQRTIA*LELQKIR 183
           E FQ++ S+KG+  N    I  +E+ KIR
Sbjct: 686 EIFQAVKSVKGVSMNLSAIIGSVEILKIR 714


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,364,754
Number of Sequences: 27780
Number of extensions: 79097
Number of successful extensions: 229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)