Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17f02
         (282 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   0.94 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   1.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   1.7  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   1.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   6.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   8.8  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 0.94
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 270 LGIQHLSLLSRGHWSCSTRN 211
           L I+HLS    G++SC  RN
Sbjct: 670 LMIEHLSPDHNGNYSCVARN 689


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 226 RPVSSGKERQVLYSKGLT 279
           +P++SG    ++YS G+T
Sbjct: 291 KPINSGFYSTIMYSNGVT 308


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 226 RPVSSGKERQVLYSKGLT 279
           +P++SG    ++YS G+T
Sbjct: 291 KPINSGFYSTIMYSNGVT 308


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 198 RGSENYVWSTTSVLGKGATGAVFQGV 275
           +G+ + +W+  S      TGA+F G+
Sbjct: 293 QGASDILWTQASAKAISETGALFFGL 318


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 280 LLTPWNTAPVAPFP 239
           +LTP ++ PV+P P
Sbjct: 434 ILTPPSSNPVSPVP 447


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.4 bits (38), Expect = 8.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 169 LQKIRKCHSCVVQRITCGARPVSSGKERQVLYSKG 273
           +++I    SC+ + I C    V+ G+  +    KG
Sbjct: 427 VREIAFSESCLPEEILCPHFNVTDGETTKTFCCKG 461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,216
Number of Sequences: 438
Number of extensions: 1342
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)