Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17f01
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 30 0.28
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 27 2.6
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 27 2.6
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 26 4.6
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 26 4.6
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 4.6
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 26 6.0
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 26 6.0
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M... 26 6.0
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 25 8.0
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 25 8.0
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 30.3 bits (65), Expect = 0.28
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = -1
Query: 189 VLRESISS-TTLEKCFSIDSYMTTSIDFISCSSLFKCPAYTK*P--TKQMLKRG-PKVHC 22
+ ++S+SS TTL K S SY+ T+ + + +S FK T P K++L G P H
Sbjct: 544 IQQKSVSSETTLVKPSSTSSYIDTTNNVLKTNSSFKSSGLTSGPRNEKELLPEGIPTSHN 603
Query: 21 RNRTK 7
+ T+
Sbjct: 604 NSETQ 608
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 372 YINLVISSVY*TLSRLLTTPFFVNST 295
YIN V + TL+ LLT PF V+ T
Sbjct: 247 YINFVSGGISGTLATLLTQPFDVSKT 272
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Frame = -3
Query: 253 YNCVPRSNRVILQVAQHHKRVRFKRINFVYHIGKMFF----HRFVHDH 122
Y V R+ R++ V H N +YH GK++F HDH
Sbjct: 269 YQLVARNMRILFHVC-HLVHADLSEYNLLYHKGKVYFIDVSQSVEHDH 315
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 458 RHGLH-LSKFKNAFASVSTTFVHHPI 532
R GL SKF AFAS+S+ F+H+ +
Sbjct: 39 RSGLSKFSKFVYAFASISSGFLHYQL 64
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 176 DSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKI 271
D K+ T +M+S +NT+R WD VK GK++
Sbjct: 59 DINKSST-LMVSGAADNTMRLWD--VKTGKQL 87
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 636 CSFADQLLSTFIANNYLCYFYRR 704
C + + S F AN LCYFY R
Sbjct: 344 CGYYELAWSIFQANMELCYFYPR 366
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +2
Query: 131 YESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAV 250
Y + +++ +++D +S D S+ NN++ TW+ +
Sbjct: 290 YTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVI 329
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 262 AIFYNCVPRSNRVILQVAQHHKRVRFKRI 176
A+ + VPR RVI QV+Q R R K+I
Sbjct: 4 AVEKDAVPRKRRVISQVSQACIRCRQKKI 32
>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -2
Query: 626 QNQNGRSVNVHHVFDRVMTRSARIVDHFSMFRWDGE 519
Q+ +G + +H ++DR++ ++ H + DGE
Sbjct: 336 QSASGAELFLHALYDRLVNEGVIVISHITQEGSDGE 371
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = +2
Query: 77 AGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVK 256
+G + + +Q + +YE+ ++ N ++ L+ ++++QN D V
Sbjct: 143 SGGIESSIQNLDPYAQSLYETAKQLLQNADTDLSKLEKTCVQYMNSVQNFPT---DIPVP 199
Query: 257 NGKKISNLD 283
+ ISNLD
Sbjct: 200 SNLSISNLD 208
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 92 NELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNN-TIRTW 241
N L E K L+ + K NVV I ++ D+ + + NN IR W
Sbjct: 81 NSLTERKKNLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEIIRKW 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,448
Number of Sequences: 5004
Number of extensions: 59505
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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