Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e24
         (291 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0539 + 16892822-16892900,16894004-16894107,16894718-168949...    28   1.1  
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576...    28   1.4  
11_04_0428 + 17628695-17628773,17628789-17629009                       25   7.7  
07_01_0318 + 2239382-2239452,2239573-2240218,2240321-2240386,224...    25   7.7  
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623...    25   7.7  

>04_03_0539 +
           16892822-16892900,16894004-16894107,16894718-16894917,
           16896078-16896178,16897546-16897735,16898377-16898458,
           16899374-16899501,16899846-16900026
          Length = 354

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 193 SLFDLEISKTNYSYYIINIVLNEALKYKNGKK 288
           S+F+ +    N+S Y++N  +  A+KY N +K
Sbjct: 317 SIFNFDPKCINWSSYLVNTHIPAAIKYANNQK 348


>04_03_0543 +
           16955440-16955518,16956623-16956726,16957456-16957655,
           16958554-16958654,16959408-16959603,16960243-16960324,
           16960402-16960668,16960790-16960917,16961285-16961465
          Length = 445

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 193 SLFDLEISKTNYSYYIINIVLNEALKYKNGKK 288
           S+F+ +    N+S Y++N  +  A+KY N +K
Sbjct: 408 SIFNFDPKCINWSSYLVNTHIPAAIKYANDQK 439


>11_04_0428 + 17628695-17628773,17628789-17629009
          Length = 99

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 137 DYFFESSWELPLIVSLKSEVYLIWKYQRRITVTILLI 247
           D+F    +++ L     S+ +LIW  +RR T   + I
Sbjct: 23  DFFVGGPYKVRLRKGAHSQAHLIWSARRRFTPIYIFI 59


>07_01_0318 +
           2239382-2239452,2239573-2240218,2240321-2240386,
           2240507-2240572,2240681-2241069,2242296-2242401
          Length = 447

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 238 YSNCNSSLIFPNQIDFRLE*HY*RQFP*AFKEIIKFIF 125
           + +CN +L    Q+D+ ++ H+ R F   F  I+++ F
Sbjct: 371 FLHCNDTLTATAQVDYYVKFHHYRSFRLQFLFILQYQF 408


>04_04_1593 -
           34661670-34661798,34661882-34661989,34662129-34662368,
           34662614-34662782,34662872-34663362,34663681-34663991,
           34664396-34664473,34665034-34665228,34665363-34665524,
           34665759-34665840
          Length = 654

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 161 PMSFQRNNQVHICLLCLSGNDKHRNYCE 78
           P    RN  +  C +C  GND  +  CE
Sbjct: 33  PQEPSRNPGIWQCTICEHGNDAKKKSCE 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,577,793
Number of Sequences: 37544
Number of extensions: 105222
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)