Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e24
         (291 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   1.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   1.8  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   3.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   3.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   4.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   5.4  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    20   7.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   7.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    19   9.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   9.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    19   9.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    19   9.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   9.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   9.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +2

Query: 107 QTSKANKYEL-----DYFFESSWELPLIVSLKSEVYLI 205
           QT  +N+ E+     DY+    W++  + ++++E + I
Sbjct: 180 QTEDSNQIEVGIDLTDYYISVEWDIIKVPAVRNEAFYI 217


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 113 SKANKYELDYFFESSWELPLIVSLKSEVYLIWKYQRRITVTILLILY 253
           ++A + +L+++    W+  L +      YLI   +   T  ILLI Y
Sbjct: 79  TEAFEVDLEFYLGKEWKKNLNLRDSVTKYLIHLKEIEDTEPILLIAY 125


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 75 TRISNLEF*QQKGHNRFSAHKRRI 4
          TR   LE  ++  +NR+   +RRI
Sbjct: 16 TRYQTLELEKEFHYNRYLTRRRRI 39


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 75  TRISNLEF*QQKGHNRFSAHKRRI 4
           TR   LE  ++  +NR+   +RRI
Sbjct: 278 TRYQTLELEKEFHYNRYLTRRRRI 301


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +2

Query: 56  SRFEILVFHNSYDVYRCQTSKANKYELDYFFE 151
           +  E  + + +Y     +     +Y+LDYF E
Sbjct: 195 NNIETYIVNTNYSSKNMREYNDPEYKLDYFME 226


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 164 LPLIVSLKSEVYLIWKY 214
           L LI  L  E+Y IW +
Sbjct: 101 LLLISGLPPEIYYIWSH 117


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 75 TRISNLEF*QQKGHNRFSAHKRRI 4
          TR   LE  ++   NR+   +RRI
Sbjct: 16 TRYQTLELEKEFHFNRYLTRRRRI 39


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +2

Query: 56  SRFEILVFHNSYDVYRCQTSKANKYELDYFFE 151
           +  E  + + +Y     +     +Y+LDYF E
Sbjct: 195 NNIETYIVNTNYSSKYMREYNDPEYKLDYFME 226


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 204 FGNIKDELQLL 236
           +GNI DEL+ L
Sbjct: 9   YGNISDELRYL 19


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 226 NSSLIFPNQI 197
           N SL+FPN I
Sbjct: 478 NLSLVFPNDI 487


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 80  ETREFQTSNFDNKKAIIDFRHT 15
           E++++ TS+   +    DF+HT
Sbjct: 206 ESKKYATSSNSLRNRTHDFQHT 227


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 80  ETREFQTSNFDNKKAIIDFRHT 15
           E++++ TS+   +    DF+HT
Sbjct: 206 ESKKYATSSNSLRSRTHDFQHT 227


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 210 FQIK*TSDLSDTINGNSH 157
           F+   T D SDTI+ +SH
Sbjct: 333 FETLHTMDSSDTIDIDSH 350


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 92  DVYRCQTSKANKYELDY 142
           D +    S+AN Y  DY
Sbjct: 126 DAHGTGNSRANTYNFDY 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,947
Number of Sequences: 438
Number of extensions: 1386
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)