Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e23
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0870 - 6789903-6792251                                           28   7.2  
07_01_1023 + 8840754-8842988,8843189-8843362                           27   9.5  
04_03_1044 - 21965237-21965341,21966130-21966300,21966414-219665...    27   9.5  

>01_01_0870 - 6789903-6792251
          Length = 782

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -3

Query: 623 AVIDLLGGAARARYGQTVIGPVGRTVYTAAL*VCLYDINGLLDVLVYRILSNGSVQVAH 447
           AV +L G     +  +T +  VG   +T  + +  + +NG   +LVY  +SNGS+  AH
Sbjct: 500 AVKNLKGVGQAEKQFRTEVQTVGMIRHTNLVRLLGFCVNGNRRLLVYEYMSNGSLD-AH 557


>07_01_1023 + 8840754-8842988,8843189-8843362
          Length = 802

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 194 ANYQDDQSRNGKQKIEAKHEVLYTGHSTFESHCYSIK 84
           A +Q++     ++K+E    ++ TG  T   H YS+K
Sbjct: 755 AKHQEEILNCNQRKLEVMDSIMLTGKFTHLQHIYSVK 791


>04_03_1044 -
           21965237-21965341,21966130-21966300,21966414-21966564,
           21968768-21969348
          Length = 335

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 396 AVGIAGYMKHTDLEDSVMRNLNASITQYPVDKNVQKTIDIIQTDLQCCG 542
           AV +AG +  T L   V R  + +++ Y V+  V+ +ID+    +   G
Sbjct: 174 AVLLAGMVNVTTLSSKVYRQRDGTVSLYGVNSLVEASIDVSNCQMSPSG 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,108,722
Number of Sequences: 37544
Number of extensions: 359078
Number of successful extensions: 853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)