Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e22
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    28   5.6  
Z49913-2|CAA90143.1|  660|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81118-8|CAB03326.3|  297|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 297 AVMTASMRMIAPAFFTSTSRHFSKARGFIPLLILSTRSEVVN 172
           A+   + R +AP  + S +  FS   GF  L   ST  EVVN
Sbjct: 823 AIELKAGRTVAPKMYDSATVMFSDIVGFTKLCSASTPIEVVN 864


>U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical
           protein R151.1 protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 266 RLHFLHRRPVTFQKHVVLSHF*YYRP 189
           R HFLHRR ++  +H ++     YRP
Sbjct: 308 RHHFLHRRSLSCSRHSIIETNILYRP 333


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
            family protein 4 protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +2

Query: 167  FLLTTSLLVDNIRSGIKPRAFEK*RDVDVKNAGAIILIDAVMTARILDLGVCCNYHRRDR 346
            FL+T SLL  +I  G+         D+D  + G I++  A+  A    + +C  YHR + 
Sbjct: 812  FLMTFSLL--SISMGVCGGLALLGSDLDSVSMGCIVM--AIGLAVDYSVHICYRYHRSEY 867

Query: 347  AVCRKSKTPTPQDVSW 394
               ++    T   V W
Sbjct: 868  KTAQEKVADTLASVGW 883


>Z49913-2|CAA90143.1|  660|Caenorhabditis elegans Hypothetical
           protein ZK938.3 protein.
          Length = 660

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 235 LFKSTWFYPTSDIIDQK*GS*QKEINNTE 149
           L K+ +F+PTSD+ D K  +   ++NN E
Sbjct: 376 LLKTHFFFPTSDLTDIKPSALPIDLNNQE 404


>Z81118-8|CAB03326.3|  297|Caenorhabditis elegans Hypothetical
           protein T10G3.3 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 528 KITARGVRYKSATAHCD*TVPVNWSLISRSHEYNYVL-NNGSTELCQETS 382
           K TA+GV+     +     VP+N SL+    +Y  V+ +NG   L ++ +
Sbjct: 116 KCTAKGVQISDCISDSGIPVPLNGSLVLSGIKYECVMDSNGKVSLHRDAA 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,980,617
Number of Sequences: 27780
Number of extensions: 246814
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)