Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17e21
(496 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr... 34 0.065
Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical pr... 29 1.9
U28738-3|AAA68310.2| 468|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z73972-7|CAA98262.2| 305|Caenorhabditis elegans Hypothetical pr... 27 5.7
U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z75531-8|CAA99801.1| 188|Caenorhabditis elegans Hypothetical pr... 27 7.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 7.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 7.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 7.5
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 27 7.5
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 27 7.5
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 27 7.5
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 27 7.5
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 27 7.5
Z99272-1|CAI79171.1| 615|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z81113-9|CAI79237.1| 615|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 27 9.9
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 27 9.9
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 27 9.9
AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal ... 27 9.9
>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical protein
F21H12.6 protein.
Length = 1374
Score = 33.9 bits (74), Expect = 0.065
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +3
Query: 123 INYEATAYENLIKLKEQVDVHVSWNVWNGDIGDIAYVFFDEQQVWKGDADSKRATI---N 293
IN ++ YE L EQ+D VS + D F+ + VW D+K A I +
Sbjct: 1249 INKKSEGYEALKSKSEQIDATVSEELKKLDSNWTGNQFYVKLLVWLSADDTKTALISAKH 1308
Query: 294 VIVSGQFNMRVKLCNEDG 347
GQF KL N+ G
Sbjct: 1309 AAALGQFGRCAKLLNKAG 1326
>Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical
protein F40F9.6b protein.
Length = 910
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Frame = -3
Query: 389 GVCDFDQHGIA-YGTAVLIAKFDTHVKLPAHNNINGSPFTVGVAFPYLLLVKEHVRYVAN 213
G D QHG + G + F T LP H + TVG + PY L + Y N
Sbjct: 190 GFTDHKQHGSSSVGVDISFVNFKTAYGLPEHADAFALRNTVGNSDPYRLYNLDVFEYELN 249
Query: 212 ------VAVPYV 195
V++PY+
Sbjct: 250 NPMALYVSIPYI 261
>Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical
protein F40F9.6a protein.
Length = 924
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Frame = -3
Query: 389 GVCDFDQHGIA-YGTAVLIAKFDTHVKLPAHNNINGSPFTVGVAFPYLLLVKEHVRYVAN 213
G D QHG + G + F T LP H + TVG + PY L + Y N
Sbjct: 204 GFTDHKQHGSSSVGVDISFVNFKTAYGLPEHADAFALRNTVGNSDPYRLYNLDVFEYELN 263
Query: 212 ------VAVPYV 195
V++PY+
Sbjct: 264 NPMALYVSIPYI 275
>U28738-3|AAA68310.2| 468|Caenorhabditis elegans Hypothetical
protein T28D9.4 protein.
Length = 468
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 132 EATAYENLIKLKEQVDVHVSWNVWNGDIGDIAYVFF 239
+ T Y+N IKL + +VH++++ W I +I + +
Sbjct: 113 DRTKYKNEIKLLKTFNVHLTYSTWINSILEILALIY 148
>Z73972-7|CAA98262.2| 305|Caenorhabditis elegans Hypothetical
protein F15H10.5 protein.
Length = 305
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/56 (25%), Positives = 35/56 (62%)
Frame = +3
Query: 144 YENLIKLKEQVDVHVSWNVWNGDIGDIAYVFFDEQQVWKGDADSKRATINVIVSGQ 311
+E+++K+ V+V ++W+G G + FF+ +++ + D+ R +I +++SG+
Sbjct: 102 FEHVMKVMSFVEV--IHDLWSG--GKLVMQFFELEEMKEALEDTFRTSIQLLISGE 153
>U41548-4|AAA83203.1| 322|Caenorhabditis elegans Hypothetical
protein M02F4.7 protein.
Length = 322
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 168 EQVDVHVSWNVWNGDIGDIAYVFFDE 245
EQV +H +W+ W + D Y+ D+
Sbjct: 76 EQVQLHANWHTWLEYVADGTYIVGDD 101
>Z75531-8|CAA99801.1| 188|Caenorhabditis elegans Hypothetical
protein C54D10.9 protein.
Length = 188
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 341 LIAKFDTHVKLPAHNNINGSP 279
L++K D H P HNN++GSP
Sbjct: 72 LVSK-DVHWTFPDHNNLDGSP 91
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform g protein.
Length = 1769
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform f protein.
Length = 1769
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform e protein.
Length = 1769
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform d protein.
Length = 1769
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform c protein.
Length = 1769
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 153 NFRKRWPRNLFLRAHNC 103
N +KR N FLRAHNC
Sbjct: 1196 NVQKRQGGNYFLRAHNC 1212
>Z99272-1|CAI79171.1| 615|Caenorhabditis elegans Hypothetical
protein T03F6.8 protein.
Length = 615
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 259 FHTCCSSKNTYAMSPMSPFHTFQLT*TS 176
+ CC SK ++ P +PF+ F TS
Sbjct: 40 YKMCCQSKECFSRFPFTPFNRFGTPETS 67
>Z81513-2|CAB04186.2| 489|Caenorhabditis elegans Hypothetical
protein F26D2.2 protein.
Length = 489
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +3
Query: 48 VVAVSNAIPGTPVIDWAERNYALVKINYEATAYENLIKLKEQ 173
+V+V +IP + E+ +L + +YE + +E+L+ +E+
Sbjct: 97 LVSVKKSIPDRTKLQSGEKEKSLNEADYELSKFEDLLSSRER 138
>Z81113-9|CAI79237.1| 615|Caenorhabditis elegans Hypothetical
protein T03F6.8 protein.
Length = 615
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 259 FHTCCSSKNTYAMSPMSPFHTFQLT*TS 176
+ CC SK ++ P +PF+ F TS
Sbjct: 40 YKMCCQSKECFSRFPFTPFNRFGTPETS 67
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 241 TSSRYGKATPTVKGLPLMLL 300
T S+Y TP VKG+PL++L
Sbjct: 378 TGSKYIPPTPIVKGVPLVVL 397
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 370 WSKSQTPTAVIWRRSNTHGWKTTNPAEERIKLSLRT 477
W + + PT I +R + GW T EE +LS +T
Sbjct: 1195 WGEEKEPTTTIQKRDDDWGWDETQ--EEPKELSEKT 1228
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 241 TSSRYGKATPTVKGLPLMLL 300
T S+Y TP VKG+PL++L
Sbjct: 378 TGSKYIPPTPIVKGVPLVVL 397
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 241 TSSRYGKATPTVKGLPLMLL 300
T S+Y TP VKG+PL++L
Sbjct: 378 TGSKYIPPTPIVKGVPLVVL 397
>AF515833-1|AAM55225.1| 489|Caenorhabditis elegans synaptonemal
complex protein SYP-1 protein.
Length = 489
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +3
Query: 48 VVAVSNAIPGTPVIDWAERNYALVKINYEATAYENLIKLKEQ 173
+V+V +IP + E+ +L + +YE + +E+L+ +E+
Sbjct: 97 LVSVKKSIPDRTKLQSGEKEKSLNEADYELSKFEDLLSSRER 138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,982,548
Number of Sequences: 27780
Number of extensions: 245121
Number of successful extensions: 699
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -