Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e18
         (218 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3EU17 Cluster: Putative uncharacterized protein; n=1; ...    30   8.8  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    30   8.8  

>UniRef50_A3EU17 Cluster: Putative uncharacterized protein; n=1;
           Leptospirillum sp. Group II UBA|Rep: Putative
           uncharacterized protein - Leptospirillum sp. Group II
           UBA
          Length = 233

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 36  IVREEIIMNALRLEGWDSRFNYYIKILXLXSQGGW 140
           +VR+ I  + +R +     ++YY+  L L +QGGW
Sbjct: 163 VVRKRITYDLIRRKSPQILYDYYVPDLGLIAQGGW 197


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 215 WMHELSAHXVLSGXRSPQTCTXLIPPPXLR 126
           W+ EL+AH VLSG  SP+    +  PP  R
Sbjct: 159 WVDELTAHLVLSGYWSPRHLYDVNAPPTSR 188


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,274,655
Number of Sequences: 1657284
Number of extensions: 3278756
Number of successful extensions: 5268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5268
length of database: 575,637,011
effective HSP length: 51
effective length of database: 491,115,527
effective search space used: 10313426067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)