Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e18
         (218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   0.19 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   0.59 
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    23   5.5  

>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 199

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 24  KTSRIVREEIIMNALRLEGWDSRFNYYIKIL 116
           KT RIV +  + N   +  WD  +NYY KI+
Sbjct: 124 KTGRIVYDAPLQN---IHNWDDLYNYYDKIV 151


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 110 LNIVVKTAVPPLQSQRIHYYFFPNYSA 30
           +N++    VPP Q   I    FPNY+A
Sbjct: 292 MNVLASQNVPPAQIDSIMKAAFPNYNA 318


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 9   LLDIIKTSRIVREEIIMNALRLEGWDSRFNYYIKIL 116
           +L +IK   IV  E +M  L  E   S F+Y++  L
Sbjct: 163 VLAVIKCCDIVHREFLMGNLYDEEDISSFSYHMSFL 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 852,822
Number of Sequences: 5004
Number of extensions: 11801
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)