Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e18
         (218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395...    26   4.7  
10_07_0115 - 13008835-13008877,13009117-13010621                       25   8.3  
01_06_0171 - 27190072-27190645,27190800-27190955,27191932-27192359     25   8.3  

>07_03_0539 -
           19237573-19239169,19239258-19239410,19239505-19239566,
           19239855-19240103,19240248-19240337,19240453-19240632,
           19240713-19240942,19241558-19241735,19242327-19242432,
           19242786-19242883,19243683-19243813,19243908-19244087,
           19244179-19244443,19244557-19244627,19244707-19244922,
           19245147-19245294
          Length = 1317

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = +1

Query: 91  VLTTILRSXNSYLKXGGGINXVHVCGLRXPLNTXWAESSC 210
           ++T+   + + + K  GG+   H+ G   P+N  ++++ C
Sbjct: 769 IVTSATLNADKFSKFFGGVPVFHIPGRTFPVNIMFSKTPC 808


>10_07_0115 - 13008835-13008877,13009117-13010621
          Length = 515

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 67  CDWRGGTAVLTTILRSXNSYLKXGGG 144
           C W    A LT  L +   YLK  GG
Sbjct: 327 CLWVASPAALTAALSTDPEYLKNAGG 352


>01_06_0171 - 27190072-27190645,27190800-27190955,27191932-27192359
          Length = 385

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 79  GGTAVLTTILRSXNSYLKXGGGIN 150
           GG A  TT     NS +  GGG++
Sbjct: 313 GGAAATTTTSHGLNSAISGGGGVS 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,324,015
Number of Sequences: 37544
Number of extensions: 103050
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)