Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e18
         (218 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23484-15|AAC46762.1|  299|Caenorhabditis elegans Hypothetical p...    26   4.2  
Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AL132902-14|CAE18021.2|  758|Caenorhabditis elegans Hypothetical...    25   9.6  

>U23484-15|AAC46762.1|  299|Caenorhabditis elegans Hypothetical
           protein EEED8.2 protein.
          Length = 299

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 80  PLQSQRIHYYFFPNYSAGLYDIQE 9
           P   + IHY+ FPN    LY +++
Sbjct: 205 PRAREEIHYFNFPNSLGELYSVEK 228


>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical
           protein R09A8.2 protein.
          Length = 891

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 56  YYFFPNYSAGLYDIQEGT 3
           YY F +Y   LYDIQ  T
Sbjct: 190 YYGFKSYDDSLYDIQPNT 207


>AL132902-14|CAE18021.2|  758|Caenorhabditis elegans Hypothetical
           protein Y71A12B.15 protein.
          Length = 758

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 72  LEGWDSRFNYYIKILXLXSQGGWRN 146
           LE W       IK L L S+G WRN
Sbjct: 595 LEQWHIGILRVIKNLVLLSKGDWRN 619


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,888,138
Number of Sequences: 27780
Number of extensions: 75859
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)