Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17e09
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   0.47 
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.1  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   9.0  
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr...    25   9.0  

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect(2) = 0.47
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 93  SEDENVLDFIIED 131
           SED+N+LDFI+ D
Sbjct: 624 SEDDNLLDFILRD 636



 Score = 22.6 bits (46), Expect(2) = 0.47
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 15  KVNAIIRKMANTSNITPDIIVNAQINSEDEN 107
           K N+ + ++   S+ + ++IVN +I S DEN
Sbjct: 569 KSNSWVNRLGIDSSAS-EVIVNGRIISHDEN 598


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 533 ETFQRLRNKNLTTLNKIKYDSELLLHYL 616
           + ++    +NLT  N+++ D +  +HYL
Sbjct: 146 DVYEFFGGENLTLFNQVRVDCQCYIHYL 173


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +1

Query: 166 HIIKVASSPQLRLLYKNAYSAVSCGNYSILCNLVQNGEYDLNAIMFNCAEIKLN 327
           +++  + +P + LL+   +++++ G  ++ CN +  G Y L  I+F   +  L+
Sbjct: 613 YVLSSSKNP-MNLLF-TLHNSITDGKLNVHCNDIIPGRYHLKTIVFKLKDSVLS 664


>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -1

Query: 613 IMKQQFTIVFNFVQRCQ 563
           +++Q+ TI+FNF++R Q
Sbjct: 17  LIRQEDTIIFNFLERAQ 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,968
Number of Sequences: 5004
Number of extensions: 35669
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)